Query= MSMg01no476_f02.b1 MSMg01no476_f02.b1 CHROMAT_FILE:
MSMg01no476_f02.b1 PHD_FILE: MSMg01no476_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:23 2005
(493 letters)
>mm_chr18_86356981_86357873
Length = 893
Score = 876 bits (453), Expect = 0.0
Identities = 482/495 (97%), Gaps = 7/495 (1%)
Strand = Plus / Plus
Query: 5 gaattcattaaatgttccaagatttctaaatattttattgagcatttattaaataaacac 64
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gaattcattaaatgctagaagatttctaaatattttattgagcatttattaaataaacac 259
Query: 65 caagttcatttgcagaataatccaacatatacttatgcagaatgactggatcaaatagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caagttcatttgcagaataatccaacatatacttatgcagaatgactggatcaaatagaa 319
Query: 125 acatagtttttccatttacagacctctcagcataaataagtattcactctgagtgattaa 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aca-agtttttccatttacagacctctcagcataaataagtattcactctgagtgattaa 378
Query: 185 gcacaaagtggaaaataatcacacacacacacacacacacacacacacacacacacacac 244
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcacaaaggggaaaataatcacacacacacacacacacacacacacacacacacacacac 438
Query: 245 ------ctctaaacgtacatgtatataacttacctgtgtccgtatttgtcctatgtgtag 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acacacctctaaacgtacatgtatataacttacctgtgtccgtatttgtcctatgtgtag 498
Query: 299 gtatgaaagtgccagactacaactgttccagaaatacttagaaatctgacgttaattgag 358
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 499 gtatgaaagtgccagactacaactgttccagaaatacttagaaatctgacattaattgag 558
Query: 359 atgctgtcaactagctagaatagacgcaatctgttctagtctgtgcaagtatcttactta 418
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atgctgtcaactagttagaatagacgcaatctgttctagtctgtgcaagtatcttactta 618
Query: 419 ataaaaatctaagactgattttttttccactggtcaggttcaattctattatttcccctg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ataaaaatctaagactgattttttttccactggtcaggttcaattctattatttcccctg 678
Query: 479 taagacaggactcag 493
|||||||||||||||
Sbjct: 679 taagacaggactcag 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_f02.g1 MSMg01no476_f02.g1 CHROMAT_FILE:
MSMg01no476_f02.g1 PHD_FILE: MSMg01no476_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:23 2005
(449 letters)
>mm_chr18_86520314_86521162
Length = 849
Score = 557 bits (288), Expect = e-163
Identities = 323/342 (94%), Gaps = 13/342 (3%)
Strand = Plus / Minus
Query: 108 tgtatatgtaacagtgaatgcccagttgtcagtgggtcattatcaacttccaacatccaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 tgtatatgtaacagtgaatgcccagttgtcagtgggtcattatcaacttccaacatccaa 790
Query: 168 ggatagggaaatttgctgaagagagtaaatataagaaccaactgatggggagaaaaatct 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ggatagggaaatttgctgaagagagtaaatataagaaccaactgatggggagaaaaatct 730
Query: 228 gcagattctgagttttgtatgttttgtgaatgttgcacccatcatcttaaaacaaaacaa 287
||||||||||||||||| | || |||||||||||||||||||||||||||||||||||
Sbjct: 729 gcagattctgagttttggacgtggggtgaatgttgcacccatcatcttaaaacaaaacaa 670
Query: 288 aacaaaacaaaacaaaacaaaacaaaacaaaaacaaggtttaattaactaagaactgaat 347
||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 669 aacaaaacaaaacaaaa---aac----------caaggtttaattaactaagaactgaat 623
Query: 348 aagaagaagccattaaatattctagtatgtctgggaccttggaggcttggactcaatcag 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 aagaagaagccattaaatattctagtatgtctgggaccttggaggcttggactcaatcag 563
Query: 408 ataaagtattggctattgatgactgtacaggaatgtggatac 449
||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 562 ataaagtattggcaattgatgactgtacaggaatgtggatac 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space: 368321
Effective search space used: 368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
