Query= MSMg01no476_j16.b1 MSMg01no476_j16.b1 CHROMAT_FILE:
MSMg01no476_j16.b1 PHD_FILE: MSMg01no476_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:46 2005
(546 letters)
>mm_chr18_69975971_69976916
Length = 946
Score = 969 bits (501), Expect = 0.0
Identities = 538/557 (96%), Gaps = 11/557 (1%)
Strand = Plus / Minus
Query: 1 caagagcaaggaagcaaaaagagcaagcttccttcttccatggcctttatataggttgcc 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 caagagcaagggagcaaaaagagcaagcttccttcttccatggcctttatataggttgcc 859
Query: 61 atcagaaagtgtagcctaaattaaggtatatcttcccacctccaaaattctggataaatg 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 atcagaaagtgtggcctaaattaaggtatatcttcccacctccaaaattctggataaatg 799
Query: 121 gtggttcttcccacacctaatgatttaattaagaaaacaatctctcataggtgtacccag 180
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gtggtttttcccacatctaatgatttaattaagaaaacaatctctcataggtgtacccag 739
Query: 181 ccattgggttttagttagttccagatgtagtcaagttgacaacaaagaatagccagcaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ccattgggttttagttagttccagatgtagtcaagttgacaacaaagaatagccagcaca 679
Query: 241 gtaatggtttaagcatgatggcacacactaatcattaatgtttttttaattaaatgcctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 gtaatggtttaagcatgatggcacacactaatcattaatgtttttttaattaaatgcctc 619
Query: 301 tttggggattttgtgtttagttagttctctctgtggtattctgggctttggggcagacac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tttggggattttgtgtttagttagttctctctgtggtattctgggctttggggcagacac 559
Query: 361 cagtagaaaaaaataccagtttaggtaagtcttcttaataactccaagtttaactaaatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cagtagaaaaaaataccagtttaggtaagtcttcttaataactccaagtttaactaaatc 499
Query: 421 tcttagtattgggcctggtgaacatggtgataggaatcatgctggt-----------gtg 469
|||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 498 tcttagtattgggcctggtgaacatggtgataggaatcatgctggtgtgagaagcaggtg 439
Query: 470 agaagcaggccctgaagaactgaaatctatcagtgagatccccaggaaccactgggtcag 529
||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 438 agaagcaggccgtgaagaactgaaaactatcagtgagatcccaaggaaccactgggtcag 379
Query: 530 aggaggcggctgtgaat 546
|||||| ||||||||||
Sbjct: 378 aggaggtggctgtgaat 362
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 946
Length adjustment: 10
Effective length of query: 536
Effective length of database: 936
Effective search space: 501696
Effective search space used: 501696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_j16.g1 MSMg01no476_j16.g1 CHROMAT_FILE:
MSMg01no476_j16.g1 PHD_FILE: MSMg01no476_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:46 2005
(385 letters)
>mm_chr18_69777919_69778702
Length = 784
Score = 659 bits (341), Expect = 0.0
Identities = 374/385 (97%), Gaps = 1/385 (0%)
Strand = Plus / Plus
Query: 1 agggaacaaaaatagccagagcttcaggcttcttcccccaactgtaagtctttgacatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggaacaaaaatagccagagcttcaggcttcttcccccaactgtaagtctttgacatgc 260
Query: 61 acttggctgaaatcctgtatctgctccttggactagctttctcacttaagattatcagtt 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 acttggctgaaatcctgtatctgctctttggactagctttctcacttaagattatcagtt 320
Query: 121 tgaagttaggaggcagtagatttcttctttcctatttagggaggacttattttggatgct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaagttaggaggcagtagatttcttctttcctatttagggaggacttattttggatgct 380
Query: 181 taaaaaaaatacttgaatgtatttttcctaagttctttattctgagggtgactggaaact 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 381 taaaaaaa-tacttgaatgtatttttcctaagttctttattctgagggtgactagaaact 439
Query: 241 tttttgtacagctaagcaattccactgagaattcagttcaggtcttgtatgaacaagtgc 300
|| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 ttgcaggacagctaagcaattccactgagaattcagttcaggtctagtatgaacaagtgc 499
Query: 301 tagattataactaaacaaggtggatcgaagagtgtcatcgatatctctagggtactctga 360
||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 500 tagattatagctaaacaaggtggatcgaagagtgtcatagatacctctagggtactctga 559
Query: 361 taatgttgatcccggggaaactggg 385
|||||||||||||||||||||||||
Sbjct: 560 taatgttgatcccggggaaactggg 584
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 784
Length adjustment: 9
Effective length of query: 376
Effective length of database: 775
Effective search space: 291400
Effective search space used: 291400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
