Query= MSMg01no477_c04.b1 MSMg01no477_c04.b1 CHROMAT_FILE:
MSMg01no477_c04.b1 PHD_FILE: MSMg01no477_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:29 2005
(493 letters)
>mm_chr18_73061340_73062232
Length = 893
Score = 559 bits (289), Expect = e-163
Identities = 298/301 (99%)
Strand = Plus / Minus
Query: 193 gccatatgtggcagtcagcaggttgttaagggcaaagacccactgtttcagctgtttctc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 gccatatgtggcagtcagcaggttgttaagggcaaagacccactgtttcagctgtttctc 834
Query: 253 caagtcgttctgtttcaggtagcaagtgaagtcatgcttggcaaatgagcagcacaagca 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 caagtcgttctgtttcaggtagcaagtgaagtcatgcttggcaaatgagcagcacaagca 774
Query: 313 gggctttcaataaatcaccaaataaatggataaatcagcatctactaatctatatatttt 372
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 773 gggctttcaataaatcaccaaataaattgataaatcagcatctactaatctgtatatttt 714
Query: 373 ttaaatcttagtttacttcagtggtctaagtcccttccttgtttttttaaaaaaaaggat 432
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 713 ttaaatcttagtttacttcagtggtccaagtcccttccttgtttttttaaaaaaaaggat 654
Query: 433 gttttaaaatttatatctaaaaggataattcagtaatgaaggggatattcagaaaattta 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gttttaaaatttatatctaaaaggataattcagtaatgaaggggatattcagaaaattta 594
Query: 493 a 493
|
Sbjct: 593 a 593
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_c04.g1 MSMg01no477_c04.g1 CHROMAT_FILE:
MSMg01no477_c04.g1 PHD_FILE: MSMg01no477_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:29 2005
(538 letters)
>mm_chr18_72860057_72860996
Length = 940
Score = 930 bits (481), Expect = 0.0
Identities = 525/543 (96%), Gaps = 8/543 (1%)
Strand = Plus / Plus
Query: 1 caagagcaggtacaattttttagtcttttt-gtgggctaataaatagtatagctgctaaa 59
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 201 caagagcaggtacaattttttagtcttttttgtggactaataaatagtatagctgctaaa 260
Query: 60 attttcaacttagtgagagtaaagttggtaagtttgggaggtgctaaaggtctgtgagac 119
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 attttcaacttagtgagagtaaagttggtaagtttgggaggtggtaaaggtctgtgagac 320
Query: 120 actggagaggggaaaagatatgaacaaaatataccacattaaaaaacattaaatgaaaca 179
|||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||
Sbjct: 321 actggagaggggaaaagatatgaacagaatataccacataaaaaaacattaaattaaaca 380
Query: 180 aataaaaatagatggaatgaaatttaaaatttacattaagtatttctctgtttctctata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaaaatagatggaatgaaatttaaaatttacattaagtatttctctgtttctctata 440
Query: 240 atgattctttt----atgacatacaaaaataaagtattgttaacagggcaaacataatta 295
||||| || ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 atgatact---cacaatgacatacaaaaataaagtattgttaacagggcaaacataatca 497
Query: 296 catttctctaatgatctctgtacatacatcataaacacacataaaaacacaaagaacatt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 catttctctaatgatctctgtacatacatcataaacacacataaaaacacaaagaacatt 557
Query: 356 ctttattgctacaaggaattgtgtgagcatagtaagattgagtttctttgtgagtcattc 415
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 558 ctttattgctacaaggaattgtgtgagcatagtaagattgagtctctttgtgagtcattc 617
Query: 416 tgtatttttccaagtgttctccgttaattaatttgattttgtgacaataacgtaaaccaa 475
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 618 tgtatttttccaagtgttctccgttaattaatttgattttgtgacaataacgaaaaccaa 677
Query: 476 aggggacgagcttctgctttggctttcatgtctaaaaaagaaaatggccctactgagttc 535
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 678 aggggacgagcttctgctttggctttcatgtctaagaaagaaaatggccctactgagttc 737
Query: 536 cca 538
|||
Sbjct: 738 cca 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 940
Length adjustment: 10
Effective length of query: 528
Effective length of database: 930
Effective search space: 491040
Effective search space used: 491040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
