Query= MSMg01no478_i08.b1 MSMg01no478_i08.b1 CHROMAT_FILE:
MSMg01no478_i08.b1 PHD_FILE: MSMg01no478_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:15 2005
(409 letters)
>mm_chr18_87869022_87869830
Length = 809
Score = 764 bits (395), Expect = 0.0
Identities = 407/413 (98%), Gaps = 4/413 (0%)
Strand = Plus / Plus
Query: 1 cattggtatgcattttcattcttacccaaagcagttcatgttctaattattagaagctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 cattggtatgcattttcattcttacccaaagcagttcatgttctaattattagaagctgt 256
Query: 61 aaatacataccttgtagctcatacacatgctcatatgcaatcaaacacacatgcaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aaatacataccttgtagctcatacacatgctcatatgcaatcaaacacacatgcaaaata 316
Query: 121 tgtacactctcacatacacagacccatatatacacacagtatctctctctctctctctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tgtacactctcacatacacagacccatatatacacacagtatctctctctctctctctct 376
Query: 181 ctct----atatatatatatatatatatacacacttatatttttatatatattatatata 236
|||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 377 ctctctctatatatatatatatatatatatatacttatatttttatatatattatatata 436
Query: 237 taatgtatataaaatattacatacacagaaactctcctacctatctctatctaatctctc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 taatgtatataaaatattacatacacagaaactctcctacctatctctatctaatctctc 496
Query: 297 tatatcatctatatatatctttatctctataatctatgtatataagtacacaaacacaac 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tatatcatctatatatatctttatctctataatctatgtatataagtacacaaacacaac 556
Query: 357 acattcacatattttatacacatattatttgtttctattgctataatacaggc 409
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acattcacatattttatacacatattatttgtttctattgctataatacaggc 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_i08.g1 MSMg01no478_i08.g1 CHROMAT_FILE:
MSMg01no478_i08.g1 PHD_FILE: MSMg01no478_i08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:15 2005
(606 letters)
>mm_chr18_88112859_88113864
Length = 1006
Score = 986 bits (510), Expect = 0.0
Identities = 562/584 (96%), Gaps = 10/584 (1%)
Strand = Plus / Minus
Query: 1 ctacactggggcattgaacatccacaggactaagggcctcccctcccattggtgacagat 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 821 ctacactggggcattgagcatccacaggactaagggcctcccctcccattggtgccagat 762
Query: 61 aagtcaatcctttgctacatatacagctggatccttgggtttctccatgtgtactctttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 aagtcaatcctttgctacatatacagctggatccttgggtttctccatgtgtactctttg 702
Query: 121 gttggtggtttaatctctgagagctctggggtttatggttggctgatatcattgttcttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 gttggtggtttaatctctgagagctctggggtttatggttggctgatatcattgttcttc 642
Query: 181 ctatgtctcctatcttaaaaaaaaaaaaaaaaaaaaaacaaacaggtatgatccatttta 240
|||||||||||||||| ||||||||||||||||| |||||||||||||| |
Sbjct: 641 ctatgtctcctatctttaaaaaaaaaaaaaaaaa--------caggtatgatccataaga 590
Query: 241 ttgttctccttaggactgtattttttggtgtgtgtactttttcatcctgttttccctgct 300
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 589 atgttctccttaggactgtattttttggtgtgtgtactttttcatccttttttcccttct 530
Query: 301 ataaccatgtgatggatcctctcaaacctttctctataaaaatatatatgttaagtgctt 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 agaaccatgtgatggatcctctcaaacctttctctataaaaatatatatgttaagtgctt 470
Query: 361 agcatttggatttgatatttagcaccagagtagatctatttaacttttttttt-caattt 419
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 469 agcatttggatttgatattcagcaccagagtagatctatttaacttttttttttcaattt 410
Query: 420 ttt-attagatgttttcatcatttacatttcaaaagctatccctatgccctcctctgcct 478
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ttttattagatgttttcatcatttacatttcaaaagctatccctatgccctcctctgcct 350
Query: 479 tgctccctacaaacccactcccacttcttggccctggcattctcctgtactggggcatat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 tgctccctacaaacccactcccacttcttggccctggcattctcctgtactggggcatat 290
Query: 539 aaagtttgcaagaccaagggggctcttttcccaaggatggccaa 582
|||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 289 aaagtttgcaagaccaagggggctcttttcccaatgatggccaa 246
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
