Query= MSMg01no479_a19.b1 MSMg01no479_a19.b1 CHROMAT_FILE:
MSMg01no479_a19.b1 PHD_FILE: MSMg01no479_a19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:54 2005
(550 letters)
>mm_chr18_83947224_83948173
Length = 950
Score = 870 bits (450), Expect = 0.0
Identities = 490/512 (95%), Gaps = 17/512 (3%)
Strand = Plus / Minus
Query: 50 tcttactacaactctaacatatacatatatataccactggggctttcgggtagactttga 109
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 950 tcttactacaactctaacatatacatatatataccactggggctttcgagtagactttga 891
Query: 110 aaataagtatttgtcttcctcccgtctgaagttgcttgtaataattctggagagctgaga 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 aaataagtatttgtcttcctcccgtctgaagttgcttgtaataattctggagagctgaga 831
Query: 170 ccccagtgatctacatactcatctctatatatgtatctctctctcttgatgtatacacac 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 ccccagtgatctacatactcatctctatatatgtatctctctctcttgatgtatacacac 771
Query: 230 acacacacacacacacactttttctcacacacacacacacac--ttagatacacaccccc 287
||||||||||||||||| | ||||||||||||||||| ||||||||||||||||
Sbjct: 770 acacacacacacacaca------cacacacacacacacacacatttagatacacaccccc 717
Query: 288 acacccatggcattcacatactacatacac--cacacacacacaggccatgtggagactc 345
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 716 atacccatggcattcacatactacatacaccacacacacacacaggccatgtggagactc 657
Query: 346 tcaaggccatgtggaaatagacaagagaagctgaggacagagtagtacagtagccatgac 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tcaaggccatgtggaaatagacaagagaagctgaggacagagtagtacagtagccatgac 597
Query: 406 atttctagagaaatctgcaggacagggtgagggtcctgacccggctcagagacagcagtg 465
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 596 atttctagagaaatctgcaggacagggtgagggtcccgacccggctcagagacagccgtg 537
Query: 466 aggaca-------tagacaggcacatccgaagtccccttctttcctttcctttctcattt 518
|||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aggacatggagggtagacaggcacatccgaagtccccttctttcctttcctttctcattt 477
Query: 519 gagcaaacatttaaaaaatggatttataacca 550
||||||||||||||||||||||||||||||||
Sbjct: 476 gagcaaacatttaaaaaatggatttataacca 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 68
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_a19.g1 MSMg01no479_a19.g1 CHROMAT_FILE:
MSMg01no479_a19.g1 PHD_FILE: MSMg01no479_a19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:54 2005
(589 letters)
>mm_chr18_83742412_83743398
Length = 987
Score = 1042 bits (539), Expect = 0.0
Identities = 576/594 (96%), Gaps = 12/594 (2%)
Strand = Plus / Plus
Query: 1 ttatgtggggnacgcccctcctttgtccagagcatatgcagaggtacaaagaaaacagct 60
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatgtggtgtacgcccctcctttgtccagagcatatgcagaggtacaaagaaaacagct 260
Query: 61 ttagatacttctctcaaaggagggcagaagtacccaagatagtccaggtaggaggaagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagatacttctctcaaaggagggcagaagtacccaagatagtccaggtaggaggaagag 320
Query: 121 aagtgaggagaatatagatttgagaagtgaccttaggctccctgtgctgtgagcaggcct 180
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 321 aagtgaggagaatatagatttgagaagtgactttaggctccctgtgctgtgagcaggcct 380
Query: 181 ggccctttccctcctctctgtggaaaacggggcagggaggcagagcatttctccttccca 240
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct: 381 ggccctttccctcctctctgtggaaaatggggca-ggaggcagagcatttctccttccca 439
Query: 241 tcagtttc-----tttctgaaggatccttgcacagaacagagcaggaaaatgagacccag 295
|||| | ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 440 tcag---cagcaa---ctgaaggatccctgcacagaacagagcaggaaaatgagacccag 493
Query: 296 agctggagatgtggaactgtgggttcggaacactcgctgacagctgctgtgacatcccta 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 agctggagatgtggaactgtgggttcggaacactcgctgacagctgctgtgacatcccta 553
Query: 356 ttgtctgaatcctttaaagccacacgggaaacttccagtgagaactggaatgaaaaaaaa 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ttgtctgaatcctttaaagccacacgggaaacttccagtgagaactggaatgaaaaaaaa 613
Query: 416 aatgccaccacaattaagtctcactagacacctagcgcctgggctctgggaaaaggaggc 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aatgccaccacaattaagtctcactagacacctagcgcctgggctctgggaaaaggaggc 673
Query: 476 cttccaccaggcaagtgaaagacaagggggaacagcttgccagcccgccgccccccatgg 535
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cttccaccaggcgagtgaaagacaagggggaacagcttgccagcccgccgccccccatgg 733
Query: 536 ttaatgaaggctctgccaggaagtgtgctcagaggagccaggatcttccttcat 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 ttaatgaaggctctgccaggaagtgtgctcagaggagccaggatcttccttcat 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 987
Length adjustment: 10
Effective length of query: 579
Effective length of database: 977
Effective search space: 565683
Effective search space used: 565683
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
