Query= MSMg01no484_a08.b1 MSMg01no484_a08.b1 CHROMAT_FILE:
MSMg01no484_a08.b1 PHD_FILE: MSMg01no484_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:26 2005
(244 letters)
>mm_chr18_35763330_35763972
Length = 643
Score = 441 bits (228), Expect = e-128
Identities = 240/244 (98%), Gaps = 1/244 (0%)
Strand = Plus / Minus
Query: 1 actttagtctgaatcaaattttcagacttttgtgtttctagtcaataatctatattgaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 actttagtctgaatcaaattttcagacttttgtgtttctagtcaataatctatattgaaa 313
Query: 61 tagggcttcactgttgcaggaaattaatttttccctcttgtgaatactgaacagatagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tagggcttcactgttgcaggaaattaatttttccctcttgtgaatactgaacagatagcc 253
Query: 121 aggcattgtaagtacctcatgcctgtaatcttangctactcaagaggcagagcagtagct 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 252 aggcattgtaagtacctcatgcctgtaatctta-gctactcaagaggcagagcggtagct 194
Query: 181 gggcatggtggcacacacctttaatcccagcactcaggaggcagaggcaggaggatttct 240
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gggcgtggtggcacacgcctttaatcccagcactcaggaggcagaggcaggaggatttct 134
Query: 241 gagt 244
||||
Sbjct: 133 gagt 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space: 148990
Effective search space used: 148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no484_a08.g1 MSMg01no484_a08.g1 CHROMAT_FILE:
MSMg01no484_a08.g1 PHD_FILE: MSMg01no484_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:26 2005
(612 letters)
>mm_chr18_35683840_35684852
Length = 1013
Score = 1139 bits (589), Expect = 0.0
Identities = 607/613 (99%), Gaps = 1/613 (0%)
Strand = Plus / Plus
Query: 1 attctatagaccagggtggccaagacctcttgcctctgtctcccaagtgctgggattata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctatagaccagggtggccaagacctcttgcctctgtctcccaagtgctgggattata 260
Query: 61 ggtgtgcattactatgcccagtttcatgtggtcctggggattgatcccagggcttcatgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtgtgcattactatgcccagtttcatgtggtcctggggattgatcccagggcttcatgc 320
Query: 121 gtcctacacaagcacttgaccaacagcaacatcccaggccccaaaactcttaagacaata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcctacacaagcacttgaccaacagcaacatcccaggccccaaaactcttaagacaata 380
Query: 181 aaaacatgagtaccaaacttcagctctgtcaccttttgactccatgatcttaggaactta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaacatgagtaccaaacttcagctctgtcaccttttgactccatgatcttaggaactta 440
Query: 241 ttggtcctagtgttcttatttgtgaaataagcattaggtcattataaggattaagtacat 300
|||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 441 ttggtcctagtgttcttatttgtgaaatgagcattaggtcattatgaggattaagtacat 500
Query: 301 tataaatatgtgtaaaaaaaaa-tatgtgtaaagaacatagcttgtatttagcaaatgca 359
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 tataaatatgtgtaaaaaaaaaatatgtgtaaagaacatagcttgtatttagcaaatgca 560
Query: 360 aaccttgaagaagaattagaaaacagcaattaaagaagaaaactgagtcaggtggtggtg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaccttgaagaagaattagaaaacagcaattaaagaagaaaactgagtcaggtggtggtg 620
Query: 420 gttcacacctttaatcctggcagaggcagcagaggctgaggtgaaagaacctaatgggga 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 621 gttcacacctttaatcctggcagaggcagcagaggctgaggtgaaagaacctaatgggaa 680
Query: 480 aacccccactcaattcccaattcggcgtgcacccaagaatcaggaacagacgaccatctt 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aacccccactcaattcccaattcggcgtgcacccaagaatcaggaacagacgaccatctt 740
Query: 540 gatgtaaaagcatgaggtagtttaatgacggagctccgggccgacacatatctcccgaag 599
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 741 gatgtaaaagcatgaggtagtttaatgacggagctccgggctgacacatatctcccgcag 800
Query: 600 gagacagaggtgt 612
|||||||||||||
Sbjct: 801 gagacagaggtgt 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1013
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1003
Effective search space: 603806
Effective search space used: 603806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
