Query= MSMg01no485_i03.b1 MSMg01no485_i03.b1 CHROMAT_FILE:
MSMg01no485_i03.b1 PHD_FILE: MSMg01no485_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:29 2005
(566 letters)
>mm_chr18_26423055_26424021
Length = 967
Score = 1081 bits (559), Expect = 0.0
Identities = 565/567 (99%), Gaps = 1/567 (0%)
Strand = Plus / Plus
Query: 1 tagagatttctaagtgttcaaggaaatcactggattggatagttggtaagataagcacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagagatttctaagtgttcaaggaaatcactggattggatagttggtaagataagcacat 260
Query: 61 acaagaatattgttttgtcttttttctttgtaattatgaatgttaacttgaaaaaaaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaagaatattgttttgtcttttttctttgtaattatgaatgttaacttgaaaaaaaact 320
Query: 121 ttttccttaattctttctctttttactaaaatgtcactttgcctcctgtttctctttaac 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttccttaattctttctcttcttactaaaatgtcactttgcctcctgtttctctttaac 380
Query: 181 ttttaaatttcatatctcaccttgcttagagtactgtcttctgtcagaaatttt-tgctg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 ttttaaatttcatatctcaccttgcttagagtactgtcttctgtcagaaattttgtgctg 440
Query: 240 caatagcatcttttacagaaaaatagaagtggagtacaaacagaattcctgaggcatgag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caatagcatcttttacagaaaaatagaagtggagtacaaacagaattcctgaggcatgag 500
Query: 300 gagtcaaaatgtaatctgatttctccatgggtgcaatattgtaatacagagatgtgttat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtcaaaatgtaatctgatttctccatgggtgcaatattgtaatacagagatgtgttat 560
Query: 360 gaacctctgccttgataatccaaatagatttgataaaaacatggccctatatactatgag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaacctctgccttgataatccaaatagatttgataaaaacatggccctatatactatgag 620
Query: 420 gaaactactacacataatggaatagaggaaatgtagcacagcttttactagctgtcacat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaactactacacataatggaatagaggaaatgtagcacagcttttactagctgtcacat 680
Query: 480 aaagcaactaagcaagtcaagaaaagttacatattctacctaacttgattattcagacct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagcaactaagcaagtcaagaaaagttacatattctacctaacttgattattcagacct 740
Query: 540 ttgaaaagaagcttgctaggaagtaaa 566
|||||||||||||||||||||||||||
Sbjct: 741 ttgaaaagaagcttgctaggaagtaaa 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 967
Length adjustment: 10
Effective length of query: 556
Effective length of database: 957
Effective search space: 532092
Effective search space used: 532092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_i03.g1 MSMg01no485_i03.g1 CHROMAT_FILE:
MSMg01no485_i03.g1 PHD_FILE: MSMg01no485_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:29 2005
(666 letters)
>mm_chr18_26566044_26567109
Length = 1066
Score = 1139 bits (589), Expect = 0.0
Identities = 595/597 (99%), Gaps = 1/597 (0%)
Strand = Plus / Minus
Query: 71 ctttccttcaaacttcaaagttttattttgtccttacaacataataaaattccatttcct 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 ctttccttcaaacttcaaagttttattttgtccttacaacataataaaattccatttcct 1007
Query: 131 agaactttaggtgtgtgagaggtcatgaaattagaaaggagaccacaagaatgag-aaaa 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1006 agaactttaggtgtgtgagaggtcatgaaattagaaaggagaccacaagaatgagaaaaa 947
Query: 190 aaaaagctgaaagaaaatgaaaaaataaaataaaatagcatacatcccaacgtatactga 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 aaaaagctgaaagaaaatgaaaaaataaaataaaatagcatacatcccaacgtatactga 887
Query: 250 agtaaagaaaaatacaatgataacaccatgtgggcctgctattatgcacctgaactcaat 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 agtaaagaaaaatacaatgataacaccatgtgggcctgctattatgcacctgaactcaat 827
Query: 310 tcaatccccagtatttcaaaacataaatacttttatcatagtatactctaaacaaatttt 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tcaatccccagtatttcaaaacataaatacttttatcatagtatactctaaacaaatttt 767
Query: 370 acacaatgtcgatgtaaagtgctatacttaaagtcaatagaaaaattcaagggaaaccta 429
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 acacaatgtctatgtaaagtgctatacttaaagtcaatagaaaaattcaagggaaaccta 707
Query: 430 aacattaacaagaaacatagtatactccatggtaatgattggaaagcttcattcctctca 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 aacattaacaagaaacatagtatactccatggtaatgattggaaagcttcattcctctca 647
Query: 490 ttgtaaaaacacagtgagacaaaatattagagaaagtataagcatctaatgtatatgttc 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttgtaaaaacacagtgagacaaaatattagagaaagtataagcatctaatgtatatgttc 587
Query: 550 aatgatctaaatgtgatgaatatttataacagtaataagggaatgtacattcttcacagt 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aatgatctaaatgtgatgaatatttataacagtaataagggaatgtacattcttcacagt 527
Query: 610 cattgaaactattcttcataaggaactatatgttatggaggaagccaggaaatatca 666
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 cattgaaactattcttcataaggaactatatgttatggaggaagccaggaaatatca 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
