Query= MSMg01no486_p11.b1 MSMg01no486_p11.b1 CHROMAT_FILE:
MSMg01no486_p11.b1 PHD_FILE: MSMg01no486_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:26 2005
(491 letters)
>mm_chr18_87339173_87340064
Length = 892
Score = 723 bits (374), Expect = 0.0
Identities = 434/462 (93%), Gaps = 17/462 (3%)
Strand = Plus / Minus
Query: 6 aattctttgtttatctctgtacccaatttttaataagattatgtgattctctggagtcta 65
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 aattctttgtttagctctgtacccaatttttaataagattatgtgattctctggagtcta 833
Query: 66 acttcttgagtcctttgtatatattggatattagctctctatcagatgtagaattaataa 125
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 832 acttcttgagtcctttgtatatgttggatattagccctctatcagatgtagaattaataa 773
Query: 126 agatctttccccaattgtttggttgccattttgtcctatagaaagtgctcttttgtgaga 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 agatctttccccaattgtttggttgccattttgtcctatagaaagtgctcttttgtgaga 713
Query: 186 catattgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtgtgtat------aaaagaaa 239
||||||||||||||||||||||||||||||||| |||||||||| | |||| ||
Sbjct: 712 catattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaa--aa 655
Query: 240 tagtatcttaacattaatttgaattcaatgcttctctttgaagtacaataacttcaaact 299
|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct: 654 tagtatcttaacattaatttccattcaatgcttctctttgaagcacaataacttcaaact 595
Query: 300 taaaatgagctctacttaaattggttattaagggcaagacccactctgtatgttgcaatt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 taaaatgagctctacttaaattggttattaagggcaagacccactctgtatgttgcaatt 535
Query: 360 tagagttgagttcc----cccccaaaggtagaaccagacttaataactatggcaatgaag 415
|||||||||||| | | |||||||||| |||||||||||||||||||||||||
Sbjct: 534 tagagttgagtttcaattc----aaaggtagaatcagacttaataactatggcaatgaat 479
Query: 416 tcattatatttgtatctacaatgtccatctgtgttgc-attt 456
||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 478 tcattatatttgtatctacaatgtccatctgtgttgctattt 437
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 892
Length adjustment: 10
Effective length of query: 481
Effective length of database: 882
Effective search space: 424242
Effective search space used: 424242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_p11.g1 MSMg01no486_p11.g1 CHROMAT_FILE:
MSMg01no486_p11.g1 PHD_FILE: MSMg01no486_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:26 2005
(624 letters)
>mm_chr18_87181282_87182305
Length = 1024
Score = 1181 bits (611), Expect = 0.0
Identities = 621/625 (99%), Gaps = 3/625 (0%)
Strand = Plus / Plus
Query: 1 caaacgaacttggctagcatgacaaatatcagttccagaactaatagaacatttgagtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaacgaacttggctagcatgacaaatatcagttccagaactaatagaacatttgagtct 260
Query: 61 tcactgatctcaaaaaaaccctgaaaattacgctgctcatgtgctttttttttttaaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcactgatctcaaaaaaaccctgaaaattacgctgctcatgtgctttttttttttaaatt 320
Query: 121 tttattttatttatttatttatttttaaatttttttttttggtttttcgagacagggttt 180
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tttattttatttatttatttatttttaaattttttttt--ggtttttcgagacagggttt 378
Query: 181 ctctgtgtagccttggctgtcctggaactcactctttagaccaggctggcctcgaactca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ctctgtgtagccttggctgtcctggaactcactctttagaccaggctggcctcgaactca 438
Query: 241 gaaatctgcctgcctctgcctcccgagtgctgggattaaaggcgtgtgccaccacgccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gaaatctgcctgcctctgcctcccgagtgctgggattaaaggcgtgtgccaccacgccca 498
Query: 301 gcttttttttttttttttttt-ctaaggacatgggcatttgggatttaattacaccaggt 359
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcttttttttttttttttttttctaaggacatgggcatttgggatttaattacaccaggt 558
Query: 360 tctcaattctattagggaatcacctgaaagaaaagtaaagtataatggatagaaaataaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tctcaattctattagggaatcacctgaaagaaaagtaaagtataatggatagaaaataaa 618
Query: 420 cagcactctatggttcagagaacaactcaatacaaactgtaaccatttacagcaattaat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cagcactctatggttcagagaacaactcaatacaaactgtaaccatttacagcaattaat 678
Query: 480 ataatggcattttagtttaaaattttaatttccttttgtattgttctttctacatgtacg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 ataatggcattttagtttaaaattttaatttccttttgtattgttctttctacatgtacg 738
Query: 540 cttttccaatttacaactctacttgtaaatcacattacattaacaatatgattaaaatat 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cttttccaatttacaactctacttgtaaatcacattacattaacaatatgattaaaatat 798
Query: 600 atgaataaatgccacaataactaag 624
|||||||||||| ||||||||||||
Sbjct: 799 atgaataaatgcaacaataactaag 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space: 622596
Effective search space used: 622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
