CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCCGCGG
AATTCCATAGGTCTCTCCATGTAGTTACAATGTAATATTCCCAGCAACTG
AATCCTATGAAGAAAACTTACCAGTTAAGCACAACAGCTCTTTTGAAAAT
ATGGGCTCTCAGATATCAGTTACGGACTCAGTCATTATCCACATCCTTTG
TTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTCATAGACTCCCATTATTC
AAGGTGATTATTTCAACCTCCCCTGTCTGGAGCCTTCCACACACTTCCTT
TGCCTCCATTTCCAGCTGGCTGACTACTTTACTTTGAAGTTCATTATTGA
AACAGAATTAAGAGCTGGAAATATATAGCTCAGTTGGTAGAGTGCTTGCC
TAGCGTGTCCGAAGCCCTGGGTTCAGTCTTAGCACTGCGTGAACCAGCTA
TCATGGCGGTGCCTCTGTAATCCCAGCGTTCAGGAGGTGGAGACAGGAGG
TTCAGAAGTTTCAGCTCTTTCTCAGGTTTGTAGCGAGTTTAAGGCTGGCC
GGCATGGATTACATGAGATCTTGTCTCAAAAATAAGAAGAGAAGAGAGGG
AGGGAGAGGTAGAAGATAGGAGAGAGAGAGAGAGAAGAAGAAGAAGAATG
TGAGGAGGGTGAATTGAGTTCCTTTTTTTTCCCCCTTTTGTTTTTACGCT
TTTTCAATCCGTTTCGCTCATAAAACTACCTCTTTATTTATCCCCGTCTC
T

TCACACACTCGTGCGCCGTTCCCCGGAGGGGGCCGCGAGAAGGGGAGGCC
GGCGGCGCCGTTCACAGAAGGGGNGAANCAAGATTTCAAAAGAAGGANGA
ANCACCNNNGNNAAGGGGGGAAGAAAGAGACCAAAACCAACAGGGAAAAG
GAGAAAGGAACGGCCCCAAGACCAAAAAAAAGGAGGGGCCCGAAAACCAC
AAAGGGGAAAAAACCCGGGGCAAAAGGGGACCCCGGGGGGCAAAAAAAAA
AAACCCCGGAAACCGGAAGGGGAAGGGGGAAAAAGAAAAAAAAAAAAACC
CCCCCCCGAGAAAAAAGACCCCACAAAGGGGGGAAAAGCCCCCCAAAAAA
CCCCGCGGAAAAAAAACCCCCGGGGGGGGAAAAAAACCCCAAAAAAAAAA
AATCGGTCTTTTTTTGGGCGAACGGGGGGGGGATACCCCCCCCACAAAAA
AAGGGGCGACGCCGGCGGGGGGAAAAAAAAAAACAACCCGCACTTCCGGG
GGGAAAAAAAACAAAAAAACAAGTCCCCCCCCCCCCCCAAAAACGAAAGA
GCAGCAAAAACCCCCGCCCACACAACCAGAAAGTA

Query= MSMg01no488_j01.b1 MSMg01no488_j01.b1 CHROMAT_FILE:
MSMg01no488_j01.b1 PHD_FILE: MSMg01no488_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:31 2005
         (574 letters)



>mm_chr18_54854963_54855936
          Length = 974

 Score =  977 bits (505), Expect = 0.0
 Identities = 559/579 (96%), Gaps = 5/579 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttacaatgtaatattcccagcaactgaatcctatgaagaaaacttaccagttaagcacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacaatgtaatattcccagcaactgaatcctatgaagaaaacttaccagttaagcacaa 260

                                                                       
Query: 61  cagctcttttgaaaatatgggctctcagatatcagttacggactcagtcattatccacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagctcttttgaaaatatgggctctcagatatcagttacggactcagtcattatccacat 320

                                                                       
Query: 121 cctttgtttgtttgtttgtttgtttgtttgtttgttttcatagactcccattattcaagg 180
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 cgtttgtttgtttgtttgtttgtttgtttgtttgttttcatagactctcattattcaagg 380

                                                                       
Query: 181 tgattatttcaacctcccctgtctggagccttccacacacttcctttgcctccatttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgattatttcaacctcccctgtctggagccttccacacacttcctttgcctccatttcca 440

                                                                       
Query: 241 gctggctgactactttactttgaagttcattattgaaacagaattaagagctggaaatat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 gctggctgactactttactttgaagttcattattgaaacagaattaagagctggaaacat 500

                                                                       
Query: 301 atagctcagttggtagagtgcttgcctagcgtgtccgaagccctgggttcagtcttagca 360
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 atagctcagttggtagagtgcttgcctagtgtgtccgaagccctgggttcagtcttagca 560

                                                                       
Query: 361 ctgcgtgaaccagctatcatggcggtgcctctgtaatcccagcgttcaggaggtggagac 420
           |||| |||||||||| |||||||||||||||||||||||||||||| |||| |||||| |
Sbjct: 561 ctgcatgaaccagctgtcatggcggtgcctctgtaatcccagcgttaaggaagtggaggc 620

                                                                       
Query: 421 aggaggttcagaagtttcagctctttctcaggtttgtagcgagtttaaggctggccggca 480
           |||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 621 aggaggctcagaagtctcagctctttctcaggtatgtagcgagtttgaggctggccggca 680

                                                                       
Query: 481 tggattacatgagatcttgtctcaaaaataagaagagaagagagggagggagaggtagaa 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 681 tggattacatgagatcttgtctcaaaaataagaagagaagagagggagggagagatagaa 740

                                                  
Query: 541 gataggagagagagag--agaga---agaagaagaagaa 574
            |||||||||||||||  |||||   |||||||||||||
Sbjct: 741 tataggagagagagaggaagagagagagaagaagaagaa 779


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)