Query= MSMg01no489_h05.b1 MSMg01no489_h05.b1 CHROMAT_FILE:
MSMg01no489_h05.b1 PHD_FILE: MSMg01no489_h05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:41 2005
(609 letters)
>mm_chr18_88745794_88746800
Length = 1007
Score = 1135 bits (587), Expect = 0.0
Identities = 601/607 (99%), Gaps = 4/607 (0%)
Strand = Plus / Minus
Query: 4 ggaattcccatgtc-catattcagtttttgaaggttcatatgtactttctttttacatgt 62
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ggaattcccatgacaaatattcagtttttgaaggttcatatgtactttctttttacatgt 748
Query: 63 gatttaatgaaattgagcagcatcctatatgtggatcagtagtttgcatttttctcttat 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 gatttaatgaaattgagcagcatcctatatgtggatcagtagtttgcatttttctcttat 688
Query: 123 catgataggcatttatcccatgaattgaggtaaaagtcctctgtcacaagtgataaaagc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 catgataggcatttatcccatgaattgaggtaaaagtcctctgtcacaagtgataaaagc 628
Query: 183 actgataacattattttataattcttgaggcactaactaggttttaggtttaatatcaat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 actgataacattattttataattcttgaggcactaactaggttttaggtttaatatcaat 568
Query: 243 atggtgggggtacctagattgaagaatgttagagtttttctttaaggcatgtttgtgaga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atggtgggggtacctagattgaagaatgttagagtttttctttaaggcatgtttgtgaga 508
Query: 303 gtgatgaagcaaatggaaatgtctactaagcaggttggcaaagtattaataataactaat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gtgatgaagcaaatggaaatgtctactaagcaggttggcaaagtattaataataactaat 448
Query: 363 gctagatgaaaatttggaaatttatcatagaattctctatgtattgaacatatttaaatg 422
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 447 gctagatgaaaatttggaaattt---atagaattctctatgtattgaacatatttaaatg 391
Query: 423 tcttcatggtaaaggttcttgatttgcttaatttttataattctattatatttctagcat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tcttcatggtaaaggttcttgatttgcttaatttttataattctattatatttctagcat 331
Query: 483 ggatatattttaacaattaagaaactttagatgttttagttttactaagtttttaagagc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggatatattttaacaattaagaaactttagatgttttagttttactaagtttttaagagc 271
Query: 543 atataaaatatggcaattaatatttacttatgagtagaattgtatccttattttaatttt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 atataaaatatggcaattaatatttacttatgagtagaattgtatccttattttaatttt 211
Query: 603 cttccta 609
|||||||
Sbjct: 210 cttccta 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1007
Length adjustment: 10
Effective length of query: 599
Effective length of database: 997
Effective search space: 597203
Effective search space used: 597203
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_h05.g1 MSMg01no489_h05.g1 CHROMAT_FILE:
MSMg01no489_h05.g1 PHD_FILE: MSMg01no489_h05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:41 2005
(550 letters)
>mm_chr18_88582314_88583263
Length = 950
Score = 1015 bits (525), Expect = 0.0
Identities = 543/549 (98%)
Strand = Plus / Plus
Query: 2 acacccctaagccccttgccccataaaaacccctagcttctgagcctcatggccgacatc 61
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 202 acacccctaagccccttgccccataaaaacccctagcttccgagcctcatggccgacatc 261
Query: 62 cgttatctcctgtgtgggatgcttgtcagtctggagctccaggattaaactgcctcatgt 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cgttatctcctgtgtgggatgcttgtcagtctggagctccaggattaaactgcctcatgt 321
Query: 122 gtttacagcaagatggattctcctgtttctttgggagctctctcactcctgagactagag 181
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 322 gattacagcaagatggattctcgtgtttctttgggagctctctcactcctgagactagag 381
Query: 182 tgggggttcctgaaagggggtcttacaaaggcaggtttattctaagcacctgaactataa 241
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 382 tgggggttcccgaaagggggtcttacaaaggcaggtttattctaagcacctgaactagaa 441
Query: 242 ggcaagtatagctaatctcagtaggaagtctttgtaaggaaacagtttgaggttgctttc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggcaagtatagctaatctcagtaggaagtctttgtaaggaaacagtttgaggttgctttc 501
Query: 302 actcaggaggagaaatctgcggttgacatttctacacacatttgttttggctaaaggtca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 actcaggaggagaaatctgcggttgacatttctacacacatttgttttggctaaaggtca 561
Query: 362 gtgcatgggcagcactcatacttgctgacgaggaaggctttgccattcttatgagtctag 421
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtgcatgggcaacactcatacttgctgacgaggaaggctttgccattcttatgagtctag 621
Query: 422 gacactgggtccttgacatgactgtactcaaaccacattcccttggaactcttttcaaag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gacactgggtccttgacatgactgtactcaaaccacattcccttggaactcttttcaaag 681
Query: 482 cttcatctgccccttaaactttcaaccagggcttctctgcacccatcccccaacatacac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 cttcatctgccccttaaactttcaaccagggcttctctgcacccatcccccaacatacac 741
Query: 542 acacaaaac 550
|||||||||
Sbjct: 742 acacaaaac 750
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space: 507600
Effective search space used: 507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
