BAC Information

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BAC

Clone NameMSMg01-490B05
Chromosome18 (Build37)
Map Location 37,586,146 - 37,586,817
singlet/doubletsinglet
Overlap genenone
Upstream genePfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11
Downstream genePcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490B05.T7 (MSMg01no490_b05.b1)MSMg01-490B05.TJ (MSMg01no490_b05.g1)
ACCAG568401AG568402
length775667
length of high quality
(start - end)		675 (50 - 724)---
definitionCHROMAT_FILE: MSMg01no490_b05.b1 PHD_FILE: MSMg01no490_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:33 2005CHROMAT_FILE: MSMg01no490_b05.g1 PHD_FILE: MSMg01no490_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:33 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATGTTTGTTACTTGAAATTTGTCATGGTCAGGCGCTTGGAA
GAGAACCCTGACTCAGCTCAGCAACTGTTTGGATTAGAGTGACTGCACAG
GATAGTGCTCTATTGAGCTAAGAGCAAAGAGCGAGCTCCTTCCAGAGGAG
GATAATAGAATCATGATCATCACGGATTTTACATAAATTCCAGTGATCAG
TAGATGCACATCACAAACTGGATAATATAAAGAAAGCCAAGAAGAGAAAA
AATAAATTTCTGACCTAGAAGATCTATATACTAAAATCAACTAACAATGT
CAATAAATAAGAAGAGTTAATAGTTTTAAAACAAGAAATAATTATACAAA
TAAATAAAAAGAGAATTTCATAAGAGAATTGAATTTTAATACTGAAAATC
AATTCCTTAGCAAAGAATGTCTATATAAAACTATATAAATGGTAAAACTT
CACAGAAATAAATAAGGAACTAGTGGATGAAATGCATACTGACATGAGAT
AACTAAAATGAATTCAGAAAAAATTTAAAGCCTTGAGGTGGCTCAAAATT
TAAGAGCAAGTGGATCTGAGGTCATAGTTCAGCACACACTGTCTGTCACA
GCTGCCTTTACCTCTACCTCTGAGGAATTCAACACCCTCTTTAAGAACCT
TCACATTCTCAGGACATCTACTCAAATACACACAACACAAAATAAATAAA
GACNATTCTATTTTTAAAAGTAAAA

NNNNAAACCCNNNNNNNNCCAATGCTANTGNGTAAGCCTGGGCGGCCCGC
CTGGTTTTCTCGNNACANTNTTAGGTGACACTATAGACGGCCATCCGCGN
GNAAAATTTCCTCCCATCTTTTGGAAGGGAAAATAAACCTTTTAAAATTG
GCCTTGAANAAAAACACCCCTTTAAAAAAATTGTTTTCCCNNNNCCCNAT
TTCCCCTTTTTAATTCCTTTCCGGGGGAAAATTGCTTAATTCCANAAACC
CACCCCTAAAAATTTCTCTTTTTTCCCCCCCCATTTCAAAAAAAAGGGGG
GNCGCTTAAAAAAAATCAAAAAATTTTTTCGNGGGTNTGGAAAACACNAN
CANACNTNNNAAAATAATANTAATCNCNCNCCTCCCCNNNCCCCCCTTTT
GGACAAAAAANAAAAAGANNTNTTTTGGGGTGNCNNNNCNCNNNCNNNNN
NAATAATAGAAAAAAAGAAAANNGNTGNCTAAAACCCCCCCCACCCCCCC
GGGGGTGGGNGGGGGNNNNGGGGGGAGGGNATAGGGNNNGGTTTTAGGGG
GTCTTTTAGTTTGAAANCATCCCCCCNNNNTTTTTCTTTTTAGGANNNNA
NNNNCCCNNNNNCTCTTGNNGTTTGTCGCCTCAGCGNNNNNNNNCCTNNN
NNNNNNNTATTTNTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_b05.b1 MSMg01no490_b05.b1 CHROMAT_FILE:
MSMg01no490_b05.b1 PHD_FILE: MSMg01no490_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:33 2005
         (675 letters)



>mm_chr18_37585942_37587017
          Length = 1076

 Score = 1222 bits (632), Expect = 0.0
 Identities = 662/672 (98%), Gaps = 1/672 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtttgttacttgaaatttgtcatggtcaggcgcttggaagagaaccctgact 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgtttgcaacttgaaatttgtcatggtcaggcgcttggaagagaaccctgact 264

                                                                       
Query: 65  cagctcagcaactgtttggattagagtgactgcacaggatagtgctctattgagctaaga 124
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 265 cagctcagcaactgtttggattagagtgactgcacgggatagtgctctattgagctaaga 324

                                                                       
Query: 125 gcaaagagcgagctccttccagaggaggataatagaatcatgatcatcacggattttaca 184
           |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 gcaaagagcgagctccttcctgaggaagataatagaatcatgatcatcacggattttaca 384

                                                                       
Query: 185 taaattccagtgatcagtagatgcacatcacaaactggataatataaagaaagccaagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaattccagtgatcagtagatgcacatcacaaactggataatataaagaaagccaagaa 444

                                                                       
Query: 245 gagaaaaaataaatttctgacctagaagatctatatactaaaatcaactaacaatgtcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagaaaaaataaatttctgacctagaagatctatatactaaaatcaactaacaatgtcaa 504

                                                                       
Query: 305 taaataagaagagttaatagttttaaaacaagaaataattatacaaataaataaaaagag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 taaataagaagagttaatagttttaaaacaagaaataattatacaaataaataaaaagag 564

                                                                       
Query: 365 aatttcataagagaattgaattttaatactgaaaatcaattccttagcaaagaatgtcta 424
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 565 aatttcataagagaattgaattttaatactgaaagtcaattccttagcaaagaatgtcta 624

                                                                       
Query: 425 tataaaactatataaatggtaaaacttcacagaaataaataaggaactagtggatgaaat 484
           |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 625 tataaaactatataaatgctaaaacttcacagaaataaataaggaaatagtggatgaaat 684

                                                                       
Query: 485 gcatactgacatgagataactaaaatgaattcagaaaaaa-tttaaagccttgaggtggc 543
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 685 gcatactgacatgagataactaaaatgaattcagaaaaaaatttaaagccttgagatggc 744

                                                                       
Query: 544 tcaaaatttaagagcaagtggatctgaggtcatagttcagcacacactgtctgtcacagc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcaaaatttaagagcaagtggatctgaggtcatagttcagcacacactgtctgtcacagc 804

                                                                       
Query: 604 tgcctttacctctacctctgaggaattcaacaccctctttaagaaccttcacattctcag 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tgcctttacctctacctctgaggaattcaacaccctctttaagaaccttcacattctcag 864

                       
Query: 664 gacatctactca 675
           ||||||||||||
Sbjct: 865 gacatctactca 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space:   708890
Effective search space used:   708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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