BAC Information

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BAC

Clone NameMSMg01-492O06
Chromosome18 (Build37)
Map Location 71,896,676 - 71,896,855
singlet/doubletsinglet
Overlap geneDcc
Upstream genenone
Downstream geneLOC629684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492O06.T7 (MSMg01no492_o06.b1)MSMg01-492O06.TJ (MSMg01no492_o06.g1)
ACCAG570539AG570540
length750733
length of high quality
(start - end)
181 (122 - 302)46 (82 - 127)
definitionCHROMAT_FILE: MSMg01no492_o06.b1 PHD_FILE: MSMg01no492_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:14 2005CHROMAT_FILE: MSMg01no492_o06.g1 PHD_FILE: MSMg01no492_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAGNAAACGCGGCGG
AATCAAAATTATACCTCAAATATTAGACGNGTTTCTTTCCTTTTTTTTTT
CTTTTACCCTTGCCTAAGATCACTATTTCCATTTTAACAATGTCATGATT
GACAAAATGGGTAGACCATGTATATCATTCATTTACTCTATCACACCTGT
AGTCAACTCTGAGCGTATAGAAGTAATATCAGGTATGGGCTGATATCTTT
ACTAAGGATTCTAGAGCTTAGAGAAGAATCTTCCCTTTTCATTAAATTAT
ACCCTTTTTTATTTTTTTTTACAGGACCAGAACATCAGAGAATAAAAGAA
ACATAAATTTCCAGAATATCTTTGGGTCTCCTCCATATTATTGACACTTA
GTTCTAAACAAGCAAAAATCACATTTCAATATATGCCTAGCTTCCAACAC
AACTAATTCTTCCCAGCACTTACAAACATTTTAAATTGATGTTATAATGC
GATGTGACTACCTCGCCCGGACGCGTAGCGGATGAACTTGGTTATTTGTA
TCTCTGATCTATTATCTCCTTCTTACACGTTTCCTATTTCATCCCCCGTT
TGCCTTTATTGCATTTGTTTCTTCTTTTACTTACCCCCCACCTCTTTTTT
TTTTTTTAATTATCCCTCCACGCTTTCTTCACTTAACCTTAATTAATTCA
GTACATCATTGTACCTTGCTGCCATTTTTTTCCCACTTCTTTCTTCTCCC

ATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTGAACACAGACTGTATTTTTCTTTTTT
CTTGATGACTAGCTCTTATAAACTGAAAGAAAGTCTGAATTTCCTTTTGG
TATTTGTCACTGACTTATATCAGTGAGAGAAGCTCTGACTTTAGCCATCA
CACGTGGATAAGAAGTTCTGAATGAATGGCTTCAGAATCAAACTCTGTCT
GGAGTTGGTGTATTCCACAGAGGAATCTCCAAGAATATTCTTTGGTCAAG
GAGAGAAAAGAATTTGTCTCTAACGAAAGGCATTGTTCCGCTTTGATCAT
TGTAAAGACCTGTCCAAGAGGTTTTCATCTGTGCTAGCATCTGATCTGCC
TTACAAGATGTCACAGGATAATGAACTCACGGAGTCACCATTTATGTCCC
CTGGTTCATACAAAGACTTGGAAAGGACATCGAATCTCGTTGACTACCAT
TTCTGAGGCAAGGGTTGACAGTCACCTGCCTCCCTTTTCTCTCTAGGGAA
ACGTTACAATTGTTAATTGATCTGGCCTGTTCCATCTGTTCGAATCGACT
GGCTTTGTCGCCTCGCTTTGCCCTTTTACTTACTTTTTTTATTACCCCTG
CTTTTTTTCGTTTAGCGACAAGGCTTTTATGATCGTGTTATTACCCTCAT
TGGCCCCCCTCCCTTTCCTCTGTACGGTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_o06.b1 MSMg01no492_o06.b1 CHROMAT_FILE:
MSMg01no492_o06.b1 PHD_FILE: MSMg01no492_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:14 2005
         (181 letters)



>mm_chr18_71896476_71897056
          Length = 581

 Score =  317 bits (164), Expect = 2e-91
 Identities = 176/180 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatttccattttaacaatgtcatgattgacaaaatgggtagaccatgtatatcattca 60
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 201 actatttccattttaacaatgtcatgattgacaaaatgggtagtccatgtatatcattta 260

                                                                       
Query: 61  tttactctatcacacctgtagtcaactctgagcgtatagaagtaatatcaggtatgggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttactctatcacacctgtagtcaactctgagcgtatagaagtaatatcaggtatgggct 320

                                                                       
Query: 121 gatatctttactaaggattctagagcttagagaagaatcttcccttttcattaaattata 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 321 gatatctttactaaggattctagagcttagagaagaatcctcccttttcattacattata 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)