BAC Information

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BAC

Clone NameMSMg01-493A05
Chromosome18 (Build37)
Map Location 78,724,596 - 78,725,044
singlet/doubletsinglet
Overlap geneSlc14a2
Upstream geneRnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, EG620155
Downstream geneSetbp1, LOC100039242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493A05.T7 (MSMg01no493_a05.b1)MSMg01-493A05.TJ (MSMg01no493_a05.g1)
ACCAG570632AG570633
length7351,108
length of high quality
(start - end)		571 (71 - 641)---
definitionCHROMAT_FILE: MSMg01no493_a05.b1 PHD_FILE: MSMg01no493_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:24 2005CHROMAT_FILE: MSMg01no493_a05.g1 PHD_FILE: MSMg01no493_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTACAGCTGGTCCACCAAGCAGCAGGAAGAGAGAGAGCCTCTGGGACTG
GCATAAGCTTCTGAAACCTCAAAGACATTTCCCAGTGACACATTTTTCCT
AACAAGGCCACACATCCCAATCCCTGTCACTGAACCACTTCCTAGGGACC
AAACATCCAAATATATGAGCCTGTGGAGGGCCTCCTATTCAAACCACCAC
AGTAATAAATAGTTATACTTGACTGAGGTGGTGGGATGGGGAATGATGCA
GAGTCTCTGAGGTATAAATATACCCTTTGTTTTCTACTTAGCCCTTGTCC
ATAATTTCTAGTCTTAACATCCTACATGTATTTATAAACTTTATCCATTT
AAAATTATTTGGCTGTTCCATATATAAATATACATATACATGTAAATGCA
TAAATAAAATTATTATCCATTATCCATATATATATAATTTATCATCCATA
TATATGAATACTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTATCTATCTATCTATCTATCTATCTATCAATCATGAATTTTAACC
TTTTAAGCCACCCATTCCTCAATACCATCTCAAACCATTCTTTCTTCTCA
CAAATCTCACACCTGGATTCATGCCCTGTTTTGTTTATTTTTGTAAGAGA
TTCACTGAGTTTAATTAGAAGGTGATTTTGCCAGN

TCCCGCCCTCCTTTTCTGTTTTTGCCCTCTGTCGTTTGTTTTCCTCCATA
TGTAGAGGGGGAAGGTGGATATCGCGCTCATCGCCCGCAACGCGATAGAA
GACCAACCGTACGAGATAAAAAATCCCACGACGTAAGCTATATAGCGCAT
AGATAANAACAACAACAATAATTTTTTTCGTCCGCTCTCGTGGTTTTATT
ATTCTGCGTGTTCAGGTAAATGCGGGAGTGATGAAATACAGGATCGGAAT
ATAGCATCCGCCTGCGATGATAATGATTTTTGAAGCGGAGAATAGTATGG
CGCGCACACTACCGCGTGGCCCCGTAGATTTGCATTTATTTTCGCGTAGT
GCTACCCGTGCTCCGTAGATGTTATATTATGCCCTATGTGACACATCGAG
ACGAAGGAGTGGATGATAGTGATTTATGTGTGATTACACACGAGGTGAGT
GATGCTTACTATCTCTATAATATAATCTTAATAATATCCATACAGAAATA
AAGACATGCTCGCGACTCATAGAGCAGCTGGATCACGCGACTGACGCCTC
ACGTTATATTCGCCGCCGCCGAAAAGAAAATATATATTAGATAACAGCGA
CATGCTTACACGTGCTTTTTATGAGTTTATATATAGTTATGTGACATCGG
CTGTGAAGATGGAACAGGCGAAACATCTATGTGTACAAATGATATTAATA
GCGACGCGACGCGGCATGCGACTAGAATTTTCTCGTGTAGCAGATGATTC
GGACCGAGATATATATGATGGGCGCCATATACACACGCATAATGATAATT
TATTAGCCTTCCAACAAATGCACAGATGAACGAGTAATCAATCGTTTAAT
AGCGCACGACGGCTCATTCCTCGGCGCTGTAAATAGGCCCGCCGAGATAT
AACATATATTGTGTGTGTTATTGATATATGTACGATCATATGATTGCGCG
CTGGCGCAGTCGCTGTTAGTCGTCTCGTGTCATCCTTGGTATTCTGTCAG
CGTCGAGGGTATGTTGATTAGTAGAGTCTGCGGCGCTGCGCCGAGGCGGT
GTCGAGCAATATAACATAAATAGGGCTAAGAAGTATCACAGCGGGCATCC
AAACTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_a05.b1 MSMg01no493_a05.b1 CHROMAT_FILE:
MSMg01no493_a05.b1 PHD_FILE: MSMg01no493_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:24 2005
         (571 letters)



>mm_chr18_78724392_78725362
          Length = 971

 Score =  743 bits (384), Expect = 0.0
 Identities = 432/452 (95%), Gaps = 10/452 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   aggaagagagagagcctctgggactggcataagcttctgaaacctcaaagacatttccca 64
           |||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct: 205 aggaagagagagagcctctgggactggcataagcttctgaaacctcaatgccctttccca 264

                                                                       
Query: 65  gtgacacatttttcctaacaaggccacacatcccaatccctgtcactgaaccacttccta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgacacatttttcctaacaaggccacacatcccaatccctgtcactgaaccacttccta 324

                                                                       
Query: 125 gggaccaaacatccaaatatatgagcctgtggag-ggcctcctattcaaaccaccacagt 183
           ||||||||||||||||||||| |||||||||| | |||||||||||| ||||||||||||
Sbjct: 325 gggaccaaacatccaaatataagagcctgtgg-gcggcctcctattccaaccaccacagt 383

                                                                       
Query: 184 aataaatagttatacttgactgaggtggtgggatggggaatgatgcagagtctctgaggt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aataaatagttatacttgactgaggtggtgggatggggaatgatgcagagtctctgaggt 443

                                                                       
Query: 244 ataaatataccctttgttttctacttagcccttgtccataatttctagtcttaacatcct 303
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataaatataccctttgctttctacttagcccttgtccataatttctagtcttaacatcct 503

                                                                       
Query: 304 acatgtatttataaactttatccatttaaaattatttggctgttccatatataaatatac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acatgtatttataaactttatccatttaaaattatttggctgttccatatataaatatac 563

                                                                       
Query: 364 atatacat------gtaaatgcataaataaaattattatccattatccatatatatataa 417
           ||||||||      |||||||||||||||||||||||||||||||||||||||||||  |
Sbjct: 564 atatacatatacatgtaaatgcataaataaaattattatccattatccatatatata--a 621

                                           
Query: 418 tttatcatccatatatatgaatactatctatc 449
           || ||||| |||||||||||||  ||||||||
Sbjct: 622 ttaatcattcatatatatgaatgttatctatc 653


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 971
Length adjustment: 10
Effective length of query: 561
Effective length of database: 961
Effective search space:   539121
Effective search space used:   539121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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