BAC Information

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BAC

Clone NameMSMg01-493O01
Chromosome18 (Build37)
Map Location 20,272,972 - 20,273,582
singlet/doubletsinglet
Overlap geneDsc1
Upstream geneLOC665624, LOC665629, Dsc3, Dsc2
Downstream geneDsg1c, Dsg1a, Dsg1b, Dsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493O01.T7 (MSMg01no493_o01.b1)MSMg01-493O01.TJ (MSMg01no493_o01.g1)
ACCAG571291AG571292
length742744
length of high quality
(start - end)
594 (43 - 636)612 (75 - 686)
definitionCHROMAT_FILE: MSMg01no493_o01.b1 PHD_FILE: MSMg01no493_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:34 2005CHROMAT_FILE: MSMg01no493_o01.g1 PHD_FILE: MSMg01no493_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAGATCCGCGGAAT
TCTCACCTGTTTGCTACCAAATGGCTGAGAAACACCTGAAAAAATGTTCA
GCATCCTCAATCATCAGGGAAATACAAATCAAAACAACCCTGAGATTCCA
TCTCACACCAGTTAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGAT
GCTGGGGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGAGAT
TGCAAGATTGTACAACCACTCTGGAAATCAGTCTGGCGGGTTCCTCAGAA
AATTGGACATATTACTACCATAGGATCCAGCAACGCCTCTCCTGGGTATA
TATCCGGAGGATGTCCCAACCAGTAAGAAGGACACATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGGTGCC
CCTCAACAGAGGAATGGATACAAAAAATGTGGTACATTTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAACG
GTTGGACCTGGAGGGCATTATCCTGAGTGAGGTGACCCAATCACAAAAGA
ACTCAAATGGTTTGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTA
GAATGCCCAAGATATAAGTTACAATTTTGCAAACACATGAAACTGAAGAA
GAACGAAGACCAAAGTGTGGACACTTTGCCTCTTTCTTAGAT
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTTTTTTTTTTTGGCATAGGGTTT
ATGCACAATTCCTGTTTGCACCCGGGGGGCAAGGCAGGTTATTAAGGCCA
AGAAGGAGGGAAGGCTGTGGGAGGACATAATAACTGGGAGGACTTCACAG
CCTCTACCTGGGGGTAAAGGGAGGAGGGCTGCTCATGAAGGGTGTTGTCT
TTTAACTCTGACTATGTGTTAAGTGGCAGGAGAACTTTTGAAAGCTGCTT
TGAGGAGGAGCCAGTGGCTGGGCATGGGGTGTCCTGGGCCTTGCTCTCCC
CACTTGTAGGAAACCCTCTCTCCATGCACAGGTAACTGGAAGGAGACGAC
TGGCCAGGGAAGAAGGCCAACCTGTTGCTCCTCCTCCTGTTGCTTATCAC
TTGCATCCTGACTCTCTTCCAAAGCCACCTCAACCTTGCCAACCTGGCTG
CAGAGCATCTTGACAATTGCCAGCATCTGCTTAGCCTCCCTGTGCACTCC
AGGCCACCCTATCAGCTGCTCACCGTCCCTGGCCATTGGGACCACTTCAG
ATGGCTGTGGCCTGTGCTGCCCCAGGGAGCACCTTCTCTAAGCAGCTCCT
TTTCTTTCTCCTGGTGAGTAATATCCAAAGGACTAAGGAACTAGGCAGGC
TCTTACCTTCTTCCTGGCCTTGAGAGAATCGAAGGCAGGGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_o01.g1 MSMg01no493_o01.g1 CHROMAT_FILE:
MSMg01no493_o01.g1 PHD_FILE: MSMg01no493_o01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:34 2005
         (612 letters)



>mm_chr18_20272771_20273782
          Length = 1012

 Score = 1174 bits (607), Expect = 0.0
 Identities = 610/611 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   tttttttttttttggcatagggtttatgcacaattcctgtttgcacccggggggcaaggc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 812 tttttttttttttggcatagggtttatgcacaattcctgtttgcacccggggggcaaggc 753

                                                                       
Query: 62  aggttattaaggccaagaaggagggaaggctgtgggaggacataataactgggaggactt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 aggttattaaggccaagaaggagggaaggctgtgggaggacataataactgggaggactt 693

                                                                       
Query: 122 cacagcctctacctgggggtaaagggaggagggctgctcatgaagggtgttgtcttttaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cacagcctctacctgggggtaaagggaggagggctgctcatgaagggtgttgtcttttaa 633

                                                                       
Query: 182 ctctgactatgtgttaagtggcaggagaacttttgaaagctgctttgaggaggagccagt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ctctgactatgtgttaagtggcaggagaacttttgaaagctgctttgaggaggagccagt 573

                                                                       
Query: 242 ggctgggcatggggtgtcctgggccttgctctccccacttgtaggaaaccctctctccat 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ggctgggcatggggtgtcctgggccttgctctccccacttgtaggaaaccctctctccat 513

                                                                       
Query: 302 gcacaggtaactggaaggagacgactggccagggaagaaggccaacctgttgctcctcct 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gcacaggtaactggaaggagacgactggccagggaagaaggccaacctgttgctcctcct 453

                                                                       
Query: 362 cctgttgcttatcacttgcatcctgactctcttccaaagccacctcaaccttgccaacct 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cctgttgcttatcacttgcatcctgactctcttccaaagccacctcaaccttgccaacct 393

                                                                       
Query: 422 ggctgcagagcatcttgacaattgccagcatctgcttagcctccctgtgcactccaggcc 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggctgcagagcatcttgacaattgccagcatctgcttagcctccctgtgcactccaggcc 333

                                                                       
Query: 482 accctatcagctgctcaccgtccctggccattgggaccacttcagatggctgtggcctgt 541
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 accctatcagctgttcaccgtccctggccattgggaccacttcagatggctgtggcctgt 273

                                                                       
Query: 542 gctgccccagggagcaccttctctaagcagctccttttctttctcctggtgagtaatatc 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 gctgccccagggagcaccttctctaagcagctccttttctttctcctggtgagtaatatc 213

                      
Query: 602 caaaggactaa 612
           |||||||||||
Sbjct: 212 caaaggactaa 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)