BAC Information

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BAC

Clone NameMSMg01-493P08
Chromosome18 (Build37)
Map Location 61,020,362 - 61,174,192
singlet/doubletdoublet
Overlap geneLOC100042699, Arsi, Camk2a, Slc6a7
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1
Downstream geneCdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493P08.T7 (MSMg01no493_p08.b1)MSMg01-493P08.TJ (MSMg01no493_p08.g1)
ACCAG571352AG571353
length749750
length of high quality
(start - end)		651 (43 - 693)601 (73 - 673)
definitionCHROMAT_FILE: MSMg01no493_p08.b1 PHD_FILE: MSMg01no493_p08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:40 2005CHROMAT_FILE: MSMg01no493_p08.g1 PHD_FILE: MSMg01no493_p08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,020,362 - 61,021,008)(61,173,592 - 61,174,192)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAAACTATTTCCTACGAGGCAAATTCTAGAAGAACTTTCTTTCATCCTT
TTGCTGTTGTATTTATTTATTTATTGAGACAAGGTATCTCTGTTTAACAG
CCCTGGATGTTTTGGAACTCACCATATACACCAGGTTGGCCCCAAACTCA
CAGAGATCCACCTGCTTCTGCCTCCCCAGTGCTGGGACTAAAGGCATGTA
ACTTTCTAACAATGGTCGGTGGCCCAGAAGACAGTTAACCTTAGGACAAT
TGTCCAGCTCCCTGCTTCACCTTAAATTATGAGGTATTTGATGTTTTGAG
CAAAACAAGAATAACAGGCAGGTGGCTGCCAAATCCTCATGTTTCATGAA
GAAATGATGTTAGTAGTATCCAGGACCTTCTAGTTCACTCCCTTCTCTCC
TGCCCAGAGAGGGTTGCCGACTCTGTCCTCTGAGGGCGAGGGAGTCATTT
CTGTACGTAGATTCATGCTTATGCTGCTTGTGGGGGTGTGTGTTCATGAA
ACAGAGGCAGTATTGCTTTCAGAATCTTTTCCGCTTTTTGTAAATGATAG
AATACATACAGCCTTATGAAATGAATTCATGTTCACCCCACATCATGTTT
GAAACTGATCTGTGGTGATGCACAGAGCTCTGTTGAGTTATTTATTCCCA
ATATCTAGTTGATTGCTTTGTGAGTGAGGCAGAGCTTATTATTCCATCC

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTACACCCCAGTAAAGTGACAGGTTGC
CCTGCAGGAAACTTAAGGTCATCAACAAAGACGATGTTGTTCGGTGCTGG
AACCCCACACAGGCATTTTAATGGACAGGAGCACTCTGCTGCCTCTCTCC
TCACCCAACTAATGAAAGGGGGGCCCAGAGATAGCAGTCACTTGCCCAAG
GTCACACAGAAGACCGTAACTGCGACCGATGGTTTCTGTCACGCACCCCC
TCCCCACGGGCTTGGGCCGCTCCAATCCGCAGCTCTGCGTGCGGGGGCGC
GCCCATCCCCCCGCCGCCGTCTGTCCGTCATCGGATCTGTCTGGGTGTCT
CCTCAGCCTAGGGCGCTGCGCAGGGAGAGGCAGGGCGTTCGTAGCACCCC
ACGCCCGCAGCGGCCTCACGGCAGCGCCTGCGCCCTCCCGAGCCCGTGCG
CGGGAGCCGTGGGGGCAAAGGCGCAGAGGTAGGACCAGTGCTCGGCGCCC
GCTTGGCTGGCTCTCTGCGCTCTTGCAAGCTGCCCGCGCCGGCTCTCCAA
GATGAAGAAGCTCCAAGAAGCTCACCTCCGCAAGGTAGGGCACGAGGGCG
GAGCGCTCCTGAGCAAGGCTGGGAGGATCGACGGGCCAAAAGGATGCCCC
CCACTGCTCCGGGCTAGGGAAACTTTCCAACTGGATTACAGGGAGGGGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_p08.b1 MSMg01no493_p08.b1 CHROMAT_FILE:
MSMg01no493_p08.b1 PHD_FILE: MSMg01no493_p08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:40 2005
         (651 letters)



>mm_chr18_61020158_61021208
          Length = 1051

 Score = 1137 bits (588), Expect = 0.0
 Identities = 633/648 (97%), Gaps = 2/648 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaactatttcctacgaggcaaattctagaagaactttctttcatccttttgctg 64
           |||||||||||| | | ||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcaaactaatacatacgaggcaaattctagaagaactttctttcatccgtttgctg 264

                                                                       
Query: 65  ttgtatttatttatttattgagacaaggtatctctgtttaacagccctggatgttttgga 124
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 265 ttgtatttatttatttattgagacaaggtttctctgtttaacagccctggatgttttgga 324

                                                                       
Query: 125 actcaccatatacaccaggttggccccaaactcacagagatccacctgcttctgcctccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 actcaccatatacaccaggttggccccaaactcacagagatccacctgcttctgcctccc 384

                                                                       
Query: 185 cagtgctgggactaaaggcatgtaactttctaacaatggtcggtggcccagaagacagtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cagtgctgggactaaaggcatgtaactttctaacaatggtcggtggcccagaagacagtt 444

                                                                       
Query: 245 aaccttaggacaattgtccagctccctgcttcaccttaaattatgaggtatttgatgttt 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatcttaggacaattgtccagctccctgcttcaccttaaattatgaggtatttgatgttt 504

                                                                       
Query: 305 tgagcaaaacaagaataacaggcaggtggctgccaaat-cctcatgtttcatgaagaaat 363
           ||||||||||||||||||||||||||| |||||||||| || |||| |||||||||||||
Sbjct: 505 tgagcaaaacaagaataacaggcaggtagctgccaaattcc-catggttcatgaagaaat 563

                                                                       
Query: 364 gatgttagtagtatccaggaccttctagttcactcccttctctcctgcccagagagggtt 423
           ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 564 gatattagtagtatccaggaccttctagctcactcccttctctcctgcccagacagggtt 623

                                                                       
Query: 424 gccgactctgtcctctgagggcgagggagtcatttctgtacgtagattcatgcttatgct 483
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gccgactctgtcctctgagggtgagggagtcatttctgtacgtagattcatgcttatgct 683

                                                                       
Query: 484 gcttgtgggggtgtgtgttcatgaaacagaggcagtattgctttcagaatcttttccgct 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcttgtgggggtgtgtgttcatgaaacagaggcagtattgctttcagaatcttttccgct 743

                                                                       
Query: 544 ttttgtaaatgatagaatacatacagccttatgaaatgaattcatgttcaccccacatca 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttttgtaaatgatagaatacatacagccttatgaaatgaattcatgttcaccccacatca 803

                                                           
Query: 604 tgtttgaaactgatctgtggtgatgcacagagctctgttgagttattt 651
           ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 804 tgtttgaaactgatctgtgatgatgcacagagctctgttgagttattt 851


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space:   667281
Effective search space used:   667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_p08.g1 MSMg01no493_p08.g1 CHROMAT_FILE:
MSMg01no493_p08.g1 PHD_FILE: MSMg01no493_p08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:40 2005
         (601 letters)



>mm_chr18_61173205_61174205
          Length = 1001

 Score = 1162 bits (601), Expect = 0.0
 Identities = 601/601 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttacaccccagtaaagtgacaggttgccctgcaggaaacttaaggtcatcaacaaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 988 cttacaccccagtaaagtgacaggttgccctgcaggaaacttaaggtcatcaacaaagac 929

                                                                       
Query: 61  gatgttgttcggtgctggaaccccacacaggcattttaatggacaggagcactctgctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 928 gatgttgttcggtgctggaaccccacacaggcattttaatggacaggagcactctgctgc 869

                                                                       
Query: 121 ctctctcctcacccaactaatgaaaggggggcccagagatagcagtcacttgcccaaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 ctctctcctcacccaactaatgaaaggggggcccagagatagcagtcacttgcccaaggt 809

                                                                       
Query: 181 cacacagaagaccgtaactgcgaccgatggtttctgtcacgcaccccctccccacgggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 cacacagaagaccgtaactgcgaccgatggtttctgtcacgcaccccctccccacgggct 749

                                                                       
Query: 241 tgggccgctccaatccgcagctctgcgtgcgggggcgcgcccatccccccgccgccgtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tgggccgctccaatccgcagctctgcgtgcgggggcgcgcccatccccccgccgccgtct 689

                                                                       
Query: 301 gtccgtcatcggatctgtctgggtgtctcctcagcctagggcgctgcgcagggagaggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 gtccgtcatcggatctgtctgggtgtctcctcagcctagggcgctgcgcagggagaggca 629

                                                                       
Query: 361 gggcgttcgtagcaccccacgcccgcagcggcctcacggcagcgcctgcgccctcccgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gggcgttcgtagcaccccacgcccgcagcggcctcacggcagcgcctgcgccctcccgag 569

                                                                       
Query: 421 cccgtgcgcgggagccgtgggggcaaaggcgcagaggtaggaccagtgctcggcgcccgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cccgtgcgcgggagccgtgggggcaaaggcgcagaggtaggaccagtgctcggcgcccgc 509

                                                                       
Query: 481 ttggctggctctctgcgctcttgcaagctgcccgcgccggctctccaagatgaagaagct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttggctggctctctgcgctcttgcaagctgcccgcgccggctctccaagatgaagaagct 449

                                                                       
Query: 541 ccaagaagctcacctccgcaaggtagggcacgagggcggagcgctcctgagcaaggctgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccaagaagctcacctccgcaaggtagggcacgagggcggagcgctcctgagcaaggctgg 389

            
Query: 601 g 601
           |
Sbjct: 388 g 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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