Query= MSMg01no496_h15.b1 MSMg01no496_h15.b1 CHROMAT_FILE:
MSMg01no496_h15.b1 PHD_FILE: MSMg01no496_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:49 2005
(633 letters)
>mm_chr18_13860821_13861853
Length = 1033
Score = 1166 bits (603), Expect = 0.0
Identities = 623/631 (98%), Gaps = 4/631 (0%)
Strand = Plus / Minus
Query: 5 gaattcat--tctttcctggaagactgggcttaattagttagcagtgtttcattttgatg 62
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 gaattcattctcttt--tggaagactgggcttaattagttagcagtgtttcattttgatg 776
Query: 63 gttttccacaagtgaaaacagtttctagtactttcaaaacatgaataaaaacagctgtga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 gttttccacaagtgaaaacagtttctagtactttcaaaacatgaataaaaacagctgtga 716
Query: 123 attgagatcttcaaggtttcaggcccttcatcacgcatcactggctccacaagatcaata 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 attgagatcttcaaggtttcaggcccttcatcacgcatcactggctccacaagatcaata 656
Query: 183 atccatattttattatataataaaggctgtctataattgaattagctcattcactccgtt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 655 atccatattttattatataataaaggctgtctataattgaattagctcattcactccatt 596
Query: 243 tgattagccctagttcattcatggagaggataaaaagaatgcacacatacctccatatat 302
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tgattagccccagttcattcatggagaggataaaaagaatgcacacatacctccatatat 536
Query: 303 tatattatttggatgcaaagagcttgagaattggtttcaatattgtttttccagggggta 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 tatattatttggatgcaaagagcttgagaattggtttcaatattgtttttccagggggta 476
Query: 363 gtatgactcacagcccatgcatgtggggatggtagcgttaagtctgtcctgccgataacc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gtatgactcacagcccatgcatgtggggatggtagcgttaagtctgtcctgccgataacc 416
Query: 423 caacgtgggtaccgtataataggtctcccttcggaccaagatcaatcccactctaaaatt 482
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 caacgtgggtactgtataataggtctcccttcggaccaagatcaatcccactctaaaatt 356
Query: 483 ctgaaagacaattgagatggtctttgtttggggttttgttttctttttatctacaatcct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 ctgaaagacaattgagatggtctttgtttggggttttgttttctttttatctacaatcct 296
Query: 543 tccccctaagatcattttctcttatccacccgaagactgtaatttggggcctctgtgagt 602
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 295 tccccctaagatcattttctcttatccacccgaagactgtaatttggggcctctgtgatt 236
Query: 603 gcttactctgaagcaaaagttagcaccagtt 633
|||||||||||||||||||||||||||||||
Sbjct: 235 gcttactctgaagcaaaagttagcaccagtt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_h15.g1 MSMg01no496_h15.g1 CHROMAT_FILE:
MSMg01no496_h15.g1 PHD_FILE: MSMg01no496_h15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:49 2005
(532 letters)
>mm_chr18_13689665_13690596
Length = 932
Score = 990 bits (512), Expect = 0.0
Identities = 527/532 (99%)
Strand = Plus / Plus
Query: 1 ctttctttgtattttaactctttaattcattccaccttcctattggggtctttagggtta 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ctttctttgtattttaactctttaattcattccaccttcctattgggggctttagggtta 260
Query: 61 attacaagcagcttacttcttggagagtccgttaatcacgatgtagaacgttgggagcaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attacaagcagcttacttcttggagagtccgttaatcacgatgtagaacgttgggagcag 320
Query: 121 gtacctcaaatgctttccatcttaacatctaattcccaggaaagctggaaaaccatcatt 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 gtacctcaaatgctttccatcttagcatctaattcccaggaaagctggaaaaccatcatt 380
Query: 181 tcacttgtgtaaggccacctacagtatgaggtaattattaaggctgattgcatatcaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacttgtgtaaggccacctacagtatgaggtaattattaaggctgattgcatatcaggg 440
Query: 241 cctatttatagcgccatagcgctctactcctctcctgctcccctcagaggatgattcaga 300
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctaaatatagcgccatagcgctctactcctctcctgctcccctcagaggatgattcaga 500
Query: 301 ggcaccaccatgtatttttgaagagtaaagctttgtgctaattaattatatcaatatcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcaccaccatgtatttttgaagagtaaagctttgtgctaattaattatatcaatatcaa 560
Query: 361 catgttgatattgatataattagcacagtggatgacactgatataattagtacaaacatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catgttgatattgatataattagcacagtggatgacactgatataattagtacaaacatt 620
Query: 421 tactcttcagaagtaagaggcagtgcatatgcatataataactctaataacagtatcact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactcttcagaagtaagaggcagtgcatatgcatataataactctaataacagtatcact 680
Query: 481 cggtaacagcaccgctctctctaaggggcttcggaaacgcgtcacacagcag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cggtaacagcaccgctctctctaaggggcttcggaaacgcgtcacacagcag 732
Score = 78.1 bits (40), Expect = 2e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 343 taattatatcaatatcaacatgttgatattgatataatta 382
||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 taattatatcaatatcaacatgttgatattgatataatta 543
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space: 481284
Effective search space used: 481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
