BAC Information

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BAC

Clone NameMSMg01-497I20
Chromosome18 (Build37)
Map Location 57,678,330 - 57,678,708
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1
Downstream gene1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497I20.T7 (MSMg01no497_i20.b1)MSMg01-497I20.TJ (MSMg01no497_i20.g1)
ACCAG574093AG574094
length737739
length of high quality
(start - end)		652 (79 - 730)554 (83 - 636)
definitionCHROMAT_FILE: MSMg01no497_i20.b1 PHD_FILE: MSMg01no497_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:17 2005CHROMAT_FILE: MSMg01no497_i20.g1 PHD_FILE: MSMg01no497_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNAAAAATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCAGACATTTCCCAAAAAAGCAGAAAAACAGTGGG
CTATTGCAAAGTGGTAAAGGCATTGTGTATCCAGAATGACACCGCAGTCC
CTAATGTGTATGAGCCAACAACACAGCATTGAAAGCACATGAGCCCAAAT
CGAATAGCACTTCAGACAGAAATAAAAGAACCCATCATTCTAATTAGAGG
TTTCGGTGTAACGGGCAGATCCAGAAAGGAGGAAATCATTGAACGACACA
TCTGGACTGAGAGGCAGCATCAGTCAACTGAATCTGACTAACATTTACAG
AAGGTTTCAACGGCAGCAGAACATGGATTTGTCTCGAGCTTGCAGAGAAT
GTTTGCCAAAATAAAGCACGTGATGAGCCCTACAAAGCACCTTAGCAAAC
ATCAGAAAAGGAAATCTTAAAAAGCAAACTCTTGGGGTTAGAGAGACGGC
TCAACAGTTACCGGTACTTGTGGCTCTTGCAGAGGACACAAATTTGGTTC
CTGGCACTTAGGTTGGTGGCTCAAAACTGCTTGTATCTCCAGGTCTCGGA
GATATGACACTGTCCTTGTCCTCTGTGTGCACCTCCACACACAGAGCATA
CACACACTCTGTCATACGGAGACACTACATAAATATAAAAATCTTTTAAA
AGAATTCTCTTATGCCACAATGGAATTAAGCTAGACN

NNTTTTCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTCCCCAGCTGATCCTT
GGTTCCTGTGTCCTGATGGCCCTGTGAGGGTCCCTCTTGGGCCAGGAATT
TGAACAGAAGTGGTGGTCTTATCTGTGCTCACAGGTGTGTAGGTACTCTT
GGAAGACCAGCTCTCTCCTGGTGGTATTTGTGTATGTGTCTCTGGTACAG
GATCAGCTCTGGGCACTGATGGAGACCGGAAGACTCCTGTCCTAGGCAGT
CCCTTAGTTCCTGTGTCCTGAGGGTTCTGGGCAGGTTCCTCTGAGCATCA
GTGGTGGTCCTACCTGTGCTCCCAGACCTGTCTGCACTATTGGGAGGCCT
GCTCCCTCCCGGCACTATTTGGATATGGAGCCTTGTGGCAGAGGATCTGC
TACAGGCTGTTTGACTATTTCAAGTCATAGTACTCAGGTTCGTCCACTGG
ACCAATAACTGGAATATGTTCTTCTAGAAAGAGTGCTTTCCATCCCATCC
CCCTTCCTCGTATCTTTCCAGAACTCGGATGGGCAGTAGCCACTCAGCAT
CACTGTTCCTCTTGTGGTTCTCTTGCATTTCTGTCAGACAAATGCAAACA
GAGTACCTACTTAATCTGAAAGAATTCATGAGTATAATATTCAAGAGTAT
TCATGTTGTTAAACTGTCTCTTTATGTTATTATACTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_i20.g1 MSMg01no497_i20.g1 CHROMAT_FILE:
MSMg01no497_i20.g1 PHD_FILE: MSMg01no497_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:17 2005
         (554 letters)



>mm_chr18_57677755_57678708
          Length = 954

 Score =  725 bits (375), Expect = 0.0
 Identities = 378/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 176 tctgggcactgatggagaccggaagactcctgtcctaggcagtcccttagttcctgtgtc 235
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 954 tctgggcactgatggagaccggaagactcctgtcccaggcagtcccttagttcctgtgtc 895

                                                                       
Query: 236 ctgagggttctgggcaggttcctctgagcatcagtggtggtcctacctgtgctcccagac 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 ctgagggttctgggcaggttcctctgagcatcagtggtggtcctacctgtgctcccagac 835

                                                                       
Query: 296 ctgtctgcactattgggaggcctgctccctcccggcactatttggatatggagccttgtg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 ctgtctgcactattgggaggcctgctccctcccggcactatttggatatggagccttgtg 775

                                                                       
Query: 356 gcagaggatctgctacaggctgtttgactatttcaagtcatagtactcaggttcgtccac 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gcagaggatctgctacaggctgtttgactatttcaagtcatagtactcaggttcgtccac 715

                                                                       
Query: 416 tggaccaataactggaatatgttcttctagaaagagtgctttccatcccatcccccttcc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tggaccaataactggaatatgttcttctagaaagagtgctttccatcccatcccccttcc 655

                                                                       
Query: 476 tcgtatctttccagaactcggatgggcagtagccactcagcatcactgttcctcttgtgg 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tcgtatctttccagaactcggatgggcagtagccactcagcatcactgttcctcttgtgg 595

                              
Query: 536 ttctcttgcatttctgtca 554
           |||||||||||||||||||
Sbjct: 594 ttctcttgcatttctgtca 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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