BAC Information

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BAC

Clone NameMSMg01-497M04
Chromosome18 (Build37)
Map Location 60,999,276 - 60,999,590
singlet/doubletsinglet
Overlap geneTcof1
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74
Downstream geneLOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497M04.T7 (MSMg01no497_m04.b1)MSMg01-497M04.TJ (MSMg01no497_m04.g1)
ACCAG574249AG574250
length762751
length of high quality
(start - end)
387 (331 - 717)315 (324 - 638)
definitionCHROMAT_FILE: MSMg01no497_m04.b1 PHD_FILE: MSMg01no497_m04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:34 2005CHROMAT_FILE: MSMg01no497_m04.g1 PHD_FILE: MSMg01no497_m04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAAGAGGC
GCGGAATTCCAAACCTTGCCTCCAAAGTAAGACTTTCCCTCAAAACAAAC
AAACAAAAGAAAACAAACAGAATGATGGAGATGGCTCACTAGTGAAGAGA
GAGATGGCCCAATCACTAGTGAAGAGGGTGATGCCCCAGTCAGCAAAGAT
GGAAATAGCCAGTCAGTGAAATGCTGACCTTGTTTGTTTTGGTTTGGTTT
TGGTTTTCGAGACAGGGATTCTCTGTGTAGCCCTGGCTGTCCAGGAGCTC
ATTCCATAGACCAGGCTGGCCTCTTTTTTACAGGGATCTGCCCAGGCTTG
AATGAAAGGCACAGCACACACCACCATCACCCACAAGTGCTGGCCTTAAA
ACCATGAAGACCTAATTCCCCAGAACCCATGGGAAAGCCAGGTGTTGTGC
TGTTTGCTTGGAATCCCAGCAGTGGCAAGATGGGAGACAGGCAGGTCCTC
AGAGCTTGCTGGTCAGCTACTTGCCCTGGGGGCTCCTGGAAAGGACCTGC
TTCTGTCCCCAGCACCCACATGGTGGCCTCATAATCATCCACAACTCCAA
ATGCCCTCTTCTGGCCCTGGGAGTACCAGGCACGCATATAGCACCTATCT
ACACATACTTACATATCTACACTCATATCTATAAAATAAAAACAAGTAAT
TTTTAAAGAAAAAAATTTAAATTAGTTTTAAGATACTCATAAAACAGAAA
GTGGAGACCCAG
ACGATGCAGTGNGAGGCCTGGCGGCCGCCTGGATCAATAATAGGAGGTGA
ACTATAGAAGTTTCTGAACAAAATTCAGTCCTGCCGTTCATTTCAACAAC
ACCTGTCTCTTTAGTGATAACTTCTTCCCCTGAATGCCTGAGATCCAAAG
CACCGTTTCTTAAAACCCTCGAGAGTCTGAATCTCAGTGTCTCCTACTAG
TCCCAGGCTCCTGGGTCGGCACAATTGACGACCACATAGCTTCCTCTATG
GTCTGGGCTGGCTGCTTGACCACTGCCCTGCCTGCCAGTGACTTATCAGG
ACTGATGATGGTTGTTCCTGATCCAAAGAGTAGTCACCAGAGTTGGACAT
GTCTTGTGGTGGTGGGTGGTAAGATTATAAGCCTGTCCTTTCCCTCTGGG
GGCCTCCAGATCTCATGCCACAGAACGGCTGGGAGTCCCTCGGGGATGCA
GGCACAGTAACCACCATGGGTTCTGGGCGAGGCCTTCTCATGGTTCTGGG
CTAGGCCTCAGGTCCTCATACTAGCACCAAGCAACTAGTACCTGTAGGAC
CATTAGGTGGTGTAAAGTCTGCCCATCGTCTTAGATGAGAAGAGCCCGCC
TTGCTCACAGCGTTTGTGTCTTGCAGCCCCAAGACCGACACCTGTCAATT
CTGCAACCGCAGCTTTGCCATCAAAAGTAAAAGAAAAGGTGAGTTTATTT
CCGAGTTACTCATTACCTGTGGGAGCTGTATCCAGTGGAGCATATTCTGC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_m04.g1 MSMg01no497_m04.g1 CHROMAT_FILE:
MSMg01no497_m04.g1 PHD_FILE: MSMg01no497_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:34 2005
         (315 letters)



>mm_chr18_60999076_60999790
          Length = 715

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaagagtagtcaccagagttggacatgtcttgtggtggtgggtggtaagattataagcc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 515 caaagagtagtcaccagagttgggcatgtcttgtggtggtgggtggtaagattataagcc 456

                                                                       
Query: 61  tgtcctttccctctgggggcctccagatctcatgccacagaacggctgggagtccctcgg 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 455 tgtcctttccctctgggggcctccagatctcatgccacagaacagctgggagtccctcgg 396

                                                                       
Query: 121 ggatgcaggcacagtaaccaccatgggttctgggcgaggccttctcatggttctgggcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ggatgcaggcacagtaaccaccatgggttctgggcgaggccttctcatggttctgggcta 336

                                                                       
Query: 181 ggcctcaggtcctcatactagcaccaagcaactagtacctgtaggaccattaggtggtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ggcctcaggtcctcatactagcaccaagcaactagtacctgtaggaccattaggtggtgt 276

                                                                       
Query: 241 aaagtctgcccatcgtcttagatgagaagagcccgccttgctcacagcgtttgtgtcttg 300
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 275 aaagtctgcccatcttcttagatgagaagagcccaccttgctcacagcgtttgtgtcttg 216

                          
Query: 301 cagccccaagaccga 315
           |||||||||||||||
Sbjct: 215 cagccccaagaccga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)