BAC Information

Click to search

BAC

Clone NameMSMg01-499N14
Chromosome18 (Build37)
Map Location 21,833,711 - 21,834,198
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14
Downstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-499N14.T7 (MSMg01no499_n14.b1)MSMg01-499N14.TJ (MSMg01no499_n14.g1)
ACCAG575833AG575834
length732748
length of high quality
(start - end)		490 (36 - 525)249 (70 - 318)
definitionCHROMAT_FILE: MSMg01no499_n14.b1 PHD_FILE: MSMg01no499_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:20 2005CHROMAT_FILE: MSMg01no499_n14.g1 PHD_FILE: MSMg01no499_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:26:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTAAACGACTCCTATAGGTCGNAAACCGCGGAATTCCACTCTG
TTTTCCTGAATGACTCCCTGAACAATACCAACTTAGTAAGCTTTTCAGTA
CTGGGAGGGGGAGGGCACTGTATGTGACATGTGGCCAGTGGCGGCTAGCT
AAGGTCTGTTGCAGGCCTGTGCAGGAGGCCAAATACTGATCTGCAATGAT
CATGGTCTCACTCAGCTCATCATTTTCATTCACTGGAAGGGGAAACAAAG
AAATGGCAAAAGGCAGCCATGATATGAAATGGCAGATAATTACCTGATGT
ATGCTTTACACACAGTATATGGGGCTGAATGAAGGAGACCCTGGGTGTGG
AGTTTGACACGAATTCCCACTGTACTTTGTAGCCCACCTTGGAAGTACCA
GACCTATTTTTCACAGGTTAAAGGAACCATGTGACCTCTACAGAGGAGAA
GAAAATGAACAAGGAAGGTTTCAGGAGAATGTGAGCCACATGCACTAGAG
ATCTAAGCCTGATGTAAGGCAAGATCTAANGCAGCTGCTGTGGCTAAAGG
AAGTCTAAAGGCCTTACCATATCAATGATCAGACATTTCCCATTTACACA
TGTGACTAAAGGGTTGGTTCATATCAGAAAATTGCTCCATGTGCCAACCC
ACGGAATTCTTCCCCCAGGGAACCCAGTAACAAATTGGCCCCAGGGGGGT
TTTGCAAACCAAAGGGTTGGAAAAGGGAAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGTCGGAAAACCTTGATTCACTTAGATTTGACCTTAGTATAAG
GAGATAGGAATGGATCAATTCACATTTTTCTACATGATAACCAGCAGTTC
TGCCAGTACCATTTGTTGAAAATGATGTCTTTTTTCCACTGGATGGTTTT
AGCTCCCTTGTCAAAGATCAAGTGACCATAGGTGCGTGGGTTCATTTTTG
GGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGTCACTTTACCAGTAC
CATGCAGTTTTTATCACTATTTCTCTGTAGTACAGCTTTAGGTCAGGCAT
GGTGAATCCACCAGAGGTTCTTTTATCCTTGAGAAGAGTTTTTTCTATCC
TAGGTGTTTTGTTTTTCCAGATGAATTTGCGGATTGCTCTTTCTAATTTG
TTGAAGAATTTAGTTTGAAATTTTATTGGGATTGCATTGAATCTGTAGAT
TGCTTTTGGGCAGATAGCCATTTTTTACATGTTGATCTTTGCCAATCCTT
GAGCATGGGAGAATCTATCCTCTTTCCGAAACCTTCTTTTAATTCCTTTC
CTTCAAAAAATTGAAAGTTTTGGGCAAACAGAATTTTTCCTTCCCTTAAA
GCCCCCCCCGGGGTTTTTTTTTTATTTTGGGAATTATTGGGAAAAGGGGG
GGGGTCCCCAAAATTCCTTCTTCCCACCGGGGTTTTAACTTGGGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no499_n14.b1 MSMg01no499_n14.b1 CHROMAT_FILE:
MSMg01no499_n14.b1 PHD_FILE: MSMg01no499_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:20 2005
         (490 letters)



>mm_chr18_21833509_21834398
          Length = 890

 Score =  820 bits (424), Expect = 0.0
 Identities = 473/490 (96%), Gaps = 4/490 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattccactctgttttc-c-tgaatgactccctgaacaataccaacttagtaagctttt 60
           |||||||||||||  ||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gaattccactctg--ttcgcttgaatgactccctgaacaataccaacttagtaagctttt 633

                                                                       
Query: 61  cagtactgggagggggagggcactgtatgtgacatgtggccagtggcggctagctaaggt 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 cagtagtgggagggggagggcactgtatgtgacatgtggccagtggcggctagctaaggt 573

                                                                       
Query: 121 ctgttgcaggcctgtgcaggaggccaaatactgatctgcaatgatcatggtctcactcag 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 572 ctgttgcaggcctgtgcaggaggacaaatactgatctgcaatgatcatggtctcactcag 513

                                                                       
Query: 181 ctcatcattttcattcactggaaggggaaacaaagaaatggcaaaaggcagccatgatat 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 ctcatcgttttcattcactggaaggggaaacaaagaaatggcaaaaggcagccatgatat 453

                                                                       
Query: 241 gaaatggcagataattacctgatgtatgctttacacacagtatatggggctgaatgaagg 300
           ||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct: 452 gaaatggcagataattacctgctgtatgctttacacacagcacatggggctgaatgaagg 393

                                                                       
Query: 301 agaccctgggtgtggagtttgacacgaattcccactgtactttgtagcccaccttggaag 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 392 agactctgggtgtggagtttgacacgaattcccactgtactttgtagcccaccttggaaa 333

                                                                       
Query: 361 taccagacctatttttcacaggttaaaggaaccatgtgacctctacagaggagaagaaaa 420
           |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 332 taccagacctatttttcacagggtaaaggaaccatgtgacctctacagaggggaagaaaa 273

                                                                       
Query: 421 tgaacaaggaaggtttcaggagaatgtgagccacatgcactagagatctaagcctgatgt 480
           || ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 272 tggacaaggagggtttcaggagaatgtcagccacatgcactagagatctaagcctgatgt 213

                     
Query: 481 aaggcaagat 490
           ||||||||||
Sbjct: 212 aaggcaagat 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |