Query= MSMg01no500_e10.b1 MSMg01no500_e10.b1 CHROMAT_FILE:
MSMg01no500_e10.b1 PHD_FILE: MSMg01no500_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:53 2005
(351 letters)
>mm_chr18_90296620_90297370
Length = 751
Score = 648 bits (335), Expect = 0.0
Identities = 348/353 (98%), Gaps = 2/353 (0%)
Strand = Plus / Minus
Query: 1 ttccttttaaactcatggcttcttc--ttttttttttcatcaagttttgttacatgtata 58
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 748 ttccttttaaactcatggcttcttcttttttttttttcatcaagttttgttacatgtata 689
Query: 59 tttctgaatacataaacatggcttgttcaatcaatccaatgttacttgtatatatgtgtg 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tttctgaatacataaacatggcttgttcaatcaatccaatgttacttgtatatatgtgtg 629
Query: 119 ggttgatcattcagtattggagaatcagttagtgtgcttctctctgcttaagagtattcc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ggttgatcattcagtattggagaatcagttagtgtgcttctctctgcttaagagtattcc 569
Query: 179 tatacttttaatatttcaatgtctgggttgtttagcttttttgttctcttagccatccca 238
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tatactttcaatatttcaatgtctgggttgtttagcttttttgttctcttagccatcctg 509
Query: 239 tacatctctactgagtttctttgaggtccaatataagtaaataaatatagaatatacaca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tacatctctactgagtttctttgaggtccaatataagtaaataaatatagaatatacaca 449
Query: 299 gaagtagtcaggatactatgttttgcttttgctatgagtgtgtgacactttta 351
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaagtagtcaggatactatgttttgcttttgctatgagtgtgtgacactttta 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space: 253764
Effective search space used: 253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_e10.g1 MSMg01no500_e10.g1 CHROMAT_FILE:
MSMg01no500_e10.g1 PHD_FILE: MSMg01no500_e10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:53 2005
(575 letters)
>mm_chr18_90117412_90118386
Length = 975
Score = 1007 bits (521), Expect = 0.0
Identities = 562/581 (96%), Gaps = 12/581 (2%)
Strand = Plus / Plus
Query: 1 ttcgtttagctatgtaccccatttttaaataggtggctgtacatacatatataacagatg 60
|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||
Sbjct: 201 ttcgtttagctatgtaccccatttttaaataggtggttctagatacatatataacagatg 260
Query: 61 gatttatctggcatcaaagag-tggtaggctcttggttctgtggaggtttaatgccccag 119
||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gatttatctggcatcaaagagagggtaggctcttggttctgtgaaggtttaatgccccag 320
Query: 120 tgtagggggatgctagagcagtgagacaggagtgggtgagtgggtggaggagcactttca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtagggggatgctagagcagtgagacaggagtgggtgagtgggtggaggagcactttca 380
Query: 180 tagaggcaaaggggctgggggagaaggaagatgggatggaggaattgtggaggggtaac- 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaggcaaaggggctgggggagaaggaagatgggatggaggaattgtggaggggtaacc 440
Query: 239 ----tttttatgagaatattatttgaaatgtaaacaaataaaatgattaatttaaaaaaa 294
| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 441 aaga-----aggagaatattatttgaaatgtaaacaaataaaatgattaattt-aaaaaa 494
Query: 295 gaatactcactgttcttctaaaggaaccaggtttgagtcctagcacctacgtgaacaata 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gaatactcactgttcttctaaaggaaccaggtttgagtcctagcacctacgtgaacaata 554
Query: 355 caagtatctgtaactccagtacttggggatttaatgccctcccctggctttcatgaggac 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 caagtatctgtaactccagtacttggggatttaatgccctcccctggctttcatgaggac 614
Query: 415 caagaatacaaatggagtagaaacacaaatgcagaaaacaacacccttacacataaaata 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 caagaatacaaatggagtagaaacacaaatgcagaaaacaacacccttacacataaaata 674
Query: 475 cactataaatttaaatcagaaacaaataaaagttttgatatttaaagagaagaaatacat 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 cactataaatttaaatcagaaacaaataaaagttttgatatttaaagagaagaaatacat 734
Query: 535 gggagattactaagtcctttatgaaaagacaatgcaaatgt 575
||||||||||||||||||||||| |||||||||||||||||
Sbjct: 735 gggagattactaagtcctttatggaaagacaatgcaaatgt 775
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space: 545225
Effective search space used: 545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
