Query= MSMg01no502_f02.b1 MSMg01no502_f02.b1 CHROMAT_FILE:
MSMg01no502_f02.b1 PHD_FILE: MSMg01no502_f02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:19 2005
(599 letters)
>mm_chr18_57844956_57845955
Length = 1000
Score = 1017 bits (526), Expect = 0.0
Identities = 547/554 (98%), Gaps = 1/554 (0%)
Strand = Plus / Minus
Query: 42 accatctggttgctgggaattgaactcaggacctctgaaagagcagtcagtgttcttaac 101
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1000 accatctggttgctgggaattgaactcaggacctctgaaagagcagtcagtgctcttaac 941
Query: 102 cactgagccatctctccagcctgacctcacactttttgaactgacccttctgcttccacc 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940 cactgagccatctctccagcctgacctcacactttttgaactgacccttctgcttccacc 881
Query: 162 tcctcagtgtgaggattacagatgttcatgcaccttcgggcttcgttttgtccatggtag 221
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct: 880 tcctcagtgtgaggattacagatgttcatgcaccttcatgcttcgttttgtccatgctag 821
Query: 222 ggattggtcccagggcctcatgtatgctaagcagatgttctatcaatagagttacattcc 281
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 820 ggattggtcccagggcctcatgtatgctaagcagatgttctatcaatagagctacattcc 761
Query: 282 agtgtccagtaagtgatttatttaataaca-ttttttctacagctattgctcataattac 340
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 760 agtgtccagtaagtgatttatttaataacatttttttctacagctattgctcataattac 701
Query: 341 cccaacacccttctccacctaaattaaatgtacaattctctatatccactccctttctat 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cccaacacccttctccacctaaattaaatgtacaattctctatatccactccctttctat 641
Query: 401 acatatgtctcaacacacttaattccaaatccatcacttaagaataattcttcaagaatg 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 acatatgtctcaacacacttaattccaaatccatcacttaagaataattcttcaagaatg 581
Query: 461 ttctcccatctaatgtgtaatgacattagccatggttgattgtgcctgggagatattttt 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttctcccatctaatgtgtaatgacattagccatggttgattgtgcctgggagatattttt 521
Query: 521 ctttagccttccccatgtcattacgccaatctgtggcttctttcttccttccttccttcc 580
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 520 ctttagccttccccatgtcattacgccaatctgtggcttcttccttccttccttccttcc 461
Query: 581 ttccttccttcctt 594
||||||||||||||
Sbjct: 460 ttccttccttcctt 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 1000
Length adjustment: 10
Effective length of query: 589
Effective length of database: 990
Effective search space: 583110
Effective search space used: 583110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_f02.g1 MSMg01no502_f02.g1 CHROMAT_FILE:
MSMg01no502_f02.g1 PHD_FILE: MSMg01no502_f02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:19 2005
(518 letters)
>mm_chr18_57703276_57704193
Length = 918
Score = 917 bits (474), Expect = 0.0
Identities = 507/518 (97%)
Strand = Plus / Plus
Query: 1 cttaaaaatcacaaataacacacacacacacacaaagctctccttctagagaaaattatg 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 cttaaaaatcacaaataacacacacacacacaaaaagctctccttctagagaaaattata 260
Query: 61 ctcattctctatgctctactaaatcaaaaattgctgtagaaatgtattcggtatagaatt 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcattttctatgctctactaaatcaaaaattgctgtagaaatgtattcggtatagaatt 320
Query: 121 caggctatgaaatttaaatccaataaagtgaggggagtgtgtgggccagggctggattta 180
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 caggctatgaaatttaaatccgataaagtgaggcgagtgtgtgggccagggctggattta 380
Query: 181 gatttcgtagcctgggaaatgtttctacaatgtttggatgaataggtattttaactcaat 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 aatttcgtagcctgggaaatgtttctacaatgcttggatgaataggtattttaactcaac 440
Query: 241 acaaaaatattttagaaacagaattgaacttaagaaaagaaatcctatagagagacaaaa 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaaaagattttagaaacagaattgaacttaagaaaagaaatcctatagagagacaaaa 500
Query: 301 aggaaagaaaaaaggaaagcattggctttctcattagcatcccattttaataataccttc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaaagaaaaaaggaaagcattggctttctcattagcatcccattttaataataccttc 560
Query: 361 tgtttaacttgggagtcaaggctgtgaaaaagtcttagtttaaaatgaagtcctacaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtttaacttgggagtcaaggctgtgaaaaagtcttagtttaaaatgaagtcctacaaag 620
Query: 421 aactcgagaggaaatggtctttcctaggcttttgggaatgctgatctattttatttttaa 480
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 621 aactcgagaggaaatggtctttcctaggcctttgggaatgctgacctattttatttttaa 680
Query: 481 tttctatgttagagtagatgtataagaaacaaaaggcc 518
||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttctatgttagagtagatgtataagaaacaaaaggcc 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
