Query= MSMg01no502_i07.b1 MSMg01no502_i07.b1 CHROMAT_FILE:
MSMg01no502_i07.b1 PHD_FILE: MSMg01no502_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:35 2005
(672 letters)
>mm_chr18_23786124_23787194
Length = 1071
Score = 1245 bits (644), Expect = 0.0
Identities = 662/668 (99%), Gaps = 1/668 (0%)
Strand = Plus / Plus
Query: 4 ggaattctgtttattgctttgttatttgagactttcaagagggctctaagacagtgagct 63
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctgtttagtgttttgttatttgagactttcaagagggctctaagacagtgagct 263
Query: 64 cttacagagctcttgacagaaatgagtggcacccatgggagtccttaccgttcttttcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttacagagctcttgacagaaatgagtggcacccatgggagtccttaccgttcttttcct 323
Query: 124 actccacccttccagaatcttttcttgagaaaacaaggaattattgggcttgctttaaca 183
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 actccacccttccagaatcttttcttgagaaaac-aggaattattgggcttgctttaaca 382
Query: 184 aacactcaatttcatttttatcttaaaatctctatggcctttttcaatgaatgtgtttca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aacactcaatttcatttttatcttaaaatctctatggcctttttcaatgaatgtgtttca 442
Query: 244 ctttctacttaagccacaaggaacctgaaagttatatttgcagagcttcctctgtgccca 303
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 443 ctttctacttaagccacaaggaacctgaaagccacatttgcagagcttcctctgtgccca 502
Query: 304 tcacctgacacttagtgggtgataagctgcgtgtgtgctctaccactgaacacaatagca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tcacctgacacttagtgggtgataagctgcgtgtgtgctctaccactgaacacaatagca 562
Query: 364 aacctgggagaaaggctctcttatgctccttttataaatgtggaaactgagattcactat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aacctgggagaaaggctctcttatgctccttttataaatgtggaaactgagattcactat 622
Query: 424 agtgaaataaatgtgggagacatcatgacactagatcattaagtatgcatgcatatgctt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agtgaaataaatgtgggagacatcatgacactagatcattaagtatgcatgcatatgctt 682
Query: 484 ctaagacaaacattttcttttataactgtggtccaatctcaaattcaagaagttactgtg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ctaagacaaacattttcttttataactgtggtccaatctcaaattcaagaagttactgtg 742
Query: 544 gaagcgttattatgccatatgtaattcatataaggatgttattggtctaatactatcata 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gaagcgttattatgccatatgtaattcatataaggatgttattggtctaatactatcata 802
Query: 604 aaagtacatagattcttacatataggcattgaattaaaaataatctcacagaacttcagg 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaagtacatagattcttacatataggcattgaattaaaaataatctcacagaacttcagg 862
Query: 664 ataaaagg 671
||||||||
Sbjct: 863 ataaaagg 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1071
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1061
Effective search space: 702382
Effective search space used: 702382
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no502_i07.g1 MSMg01no502_i07.g1 CHROMAT_FILE:
MSMg01no502_i07.g1 PHD_FILE: MSMg01no502_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:35 2005
(557 letters)
>mm_chr18_23958788_23959745
Length = 958
Score = 1033 bits (534), Expect = 0.0
Identities = 552/558 (98%), Gaps = 1/558 (0%)
Strand = Plus / Minus
Query: 1 actttgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctctcaagtgc 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 827 actttgtagaccaggctggcctcaaactcagaaatccgcctgcctctgcctctcaagtgc 768
Query: 61 ttggattaatttttttgtttttgaaagaactctttaacaagctatggctccatcacagta 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 tgggattaatttttttgtttttgaaagaactctttaacaagctatggctccatcacagta 708
Query: 121 gaaaccattttcctaacaaggtatgccccaccacagccccatcatggtgaagtctgatcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gaaaccattttcctaacaaggtatgccccaccacagccccatcatggtgaagtctgatcg 648
Query: 181 gatgcccgaagagaagaaagttctagaagtttccatctgccctcaaggaaacaagcagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gatgcccgaagagaagaaagttctagaagtttccatctgccctcaaggaaacaagcagga 588
Query: 241 ggttgtgtggtgaatgcttcagggagctgagtttagggaagtggtgatggcaagggtgtt 300
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 587 ggttgcgtggtgaatgcttcagggagctgagtttagggtagtggtgatggcaagggtgtt 528
Query: 301 gccacatcaggtggaaagggacattaacagttcacaggaa-tcaaatagaaataactagc 359
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 527 gccacatcaggtggaaagggacattaacagttcacaggaactcaaatagaaataactagc 468
Query: 360 cgtgagaaaaggagcacgatgtcaaagggagatgtttgcaggggaaaaatgctgctaaag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cgtgagaaaaggagcacgatgtcaaagggagatgtttgcaggggaaaaatgctgctaaag 408
Query: 420 acttcagcatagagcaccaactgaaggcctggatgcattagaccagaatgcctcagcatc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 acttcagcatagagcaccaactgaaggcctggatgcattagaccagaatgcctcagcatc 348
Query: 480 aggccagaatgcgttgcaaactcaaatactggcatgggaccctgagccccacctccctca 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aggccacaatgcgttgcaaactcaaatactggcatgggaccctgagccccacctccctca 288
Query: 540 cattctggctttctacaa 557
||||||||||||||||||
Sbjct: 287 cattctggctttctacaa 270
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space: 518556
Effective search space used: 518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
