BAC Information

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BAC

Clone NameMSMg01-502L22
Chromosome18 (Build37)
Map Location 56,635,294 - 56,635,838
singlet/doubletsinglet
Overlap geneGramd3
Upstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432
Downstream geneLOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-502L22.T7 (MSMg01no502_l22.b1)MSMg01-502L22.TJ (MSMg01no502_l22.g1)
ACCAG578027AG578028
length775785
length of high quality
(start - end)		576 (18 - 593)418 (74 - 491)
definitionCHROMAT_FILE: MSMg01no502_l22.b1 PHD_FILE: MSMg01no502_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:51 2005CHROMAT_FILE: MSMg01no502_l22.g1 PHD_FILE: MSMg01no502_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:29:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCTATAGTTAGAGGATCCGCGGAATTCCCTGCCTTATACGGATGCCTC
CAGGCTTACACTGAGGTAGGACACTGGGAGACAACTTTGTGGCAGACATT
GTCCCACCACTTAGGACATCGTGTGGCCACTGTTACTATTTGCTCATGAC
GTCAGAGGCAGAAGAGCAGGACATAACACTCCAGGGCCCAAGGGCCTGAA
GGACTGTAATTGTCTTTATTGCAAATTGTACCTGTCCCCACTACTATGGA
GATAACAGGACAATGTTTACCACAAGCATCATCTCCACCCTAACCCCAAG
TATCCAAGGATAGGACATTGTATATCAGGGATACCGAGGAGCATGGCCGT
ACAGTGACTGAGAGACAGATCTAGGTCCCTTAGTGACAGAAAGATCTGCC
TCTAGAATGCTTCTGAGAAAATACGTGATAAGACAGTGGTTCTCAATGTC
CTTAATGCTGAGACCCTTTAACACAGTTCCCCATGTTGCGGTGATCCCCA
TCATAAAATTGTTTTTGTTGCTATTCCATAGCTATAAATTTGCAACTGTT
AAGAATCTCGATGTAAATATCTGATATGGAGGATGTCTGACATACGACCC
TAGCAAAATGGTCATTCAACCCCCAAAGGGACCGAGACCCACAGGTTGAG
AACGACTGTTATAAGAAGTCTGGAAAGCACGCCTTTGATGGTGTGCTATC
TGAACCAGCAGAGCTCTCGACAGCAAAACTATGCCTTCTGCTGGCATGAG
AAAATCTATGGATCNGTCCTCAAGA

CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTATAAAATACGAAGGTCTGAGGCTG
AAGAGATGGCTCGGGAGTTAAGAGCACTGGCTGGTCTTGAAAAGGGTCTT
AGTTCAGTTTCCAGAATCCACATGGCAGCTCCCAGTCCTCTCCAACTCCA
AACTCCCTCTTGTGGCCTCTGGTGGAACTGCCTGCATGTGATGGTGCAAA
TACATACATGCAGGCAAACATTCATATGCATAAAATCAAAGGTACACCTC
TTTTTTTTAAAGCTATTTTAACAAATATACTCAGGTTTATTTAAAAGTAA
TTGTTCAAAGGCCCAAACACGTATATAGTCTAATGGTCAAGTAAGAAGAA
AAAGTGTGTTCGGGGCTTGTGCTGGTTCTATTTTGTACATATCAAGTTTC
TCTGCCCACCCCTTACCCAGTAATTGTTGTAGTGGTTGTGNGTTGTGGTT
TGTGGTTGTGGTTNTNNNNNNNNNNNNNNNNTNNNTNNTNTNNNTNNTTT
TTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTNTT
TTTTTTTNTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTNTTTTTTTNTNN
TTTTTTTNTTTTTTTTTTTTTTTTTTTNNTTTTTTNTTTTTTNTTTTTTT
TTTTTTNTTTTTTTTTNTNTTTTTTNTTTTTNTTTTTTTNTTTTTTTTTT
TTTTTNTTTTNTTTTTTTTNTTTNTTTTTTTTNTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no502_l22.b1 MSMg01no502_l22.b1 CHROMAT_FILE:
MSMg01no502_l22.b1 PHD_FILE: MSMg01no502_l22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:29:51 2005
         (576 letters)



>mm_chr18_56635294_56636269
          Length = 976

 Score =  957 bits (495), Expect = 0.0
 Identities = 536/557 (96%), Gaps = 12/557 (2%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccctgccttatacggatgcctccaggcttacactgaggtaggacactgggagaca 66
           ||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 545 gaattccctgccttagagggatgcctccaggcttacattgaggtaggacactgggagaca 486

                                                                       
Query: 67  actttgtggcagacattgtcccaccacttaggacatcgtgtggccactgttactatttgc 126
           ||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 485 actttgtggaagacattgtcccaccacgtaggacatcgtgtagccactgttactatttgc 426

                                                                       
Query: 127 tcatgacgtcagaggcagaagagcaggacataacactccagggcccaagggcctgaagga 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcatgacgtcagaggcagaagagcaggacataacactccagggcccaagggcctgaagga 366

                                                                       
Query: 187 ctgtaattgtctttattgcaaattgtacctgtccccactactatggagataacaggacaa 246
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 365 ctgtaattgtctttattgcaaattgcacctgtccccactactatggagataacaggacaa 306

                                                                       
Query: 247 tgtttaccacaagcatcatctccaccctaaccccaagtatccaaggataggacattgtat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgtttaccacaagcatcatctccaccctaaccccaagtatccaaggataggacattgtat 246

                                                                       
Query: 307 atcagggataccgaggagcatggccgtacagtgactgagagacagatctaggtcccttag 366
           |||||||||||||||||||||||||||||||||||||            |||||||||||
Sbjct: 245 atcagggataccgaggagcatggccgtacagtgactg------------aggtcccttag 198

                                                                       
Query: 367 tgacagaaagatctgcctctagaatgcttctgagaaaatacgtgataagacagtggttct 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 tgacagaaagatctgcctctagaatgcttctgagaaaatacgtgataagacagtggttct 138

                                                                       
Query: 427 caatgtccttaatgctgagaccctttaacacagttccccatgttgcggtgatccccatca 486
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 137 caatgtccttaatgctgagaccctttaacaaagttccccatgttgcggtgatccccatca 78

                                                                       
Query: 487 taaaattgtttttgttgctattccatagctataaatttgcaactgttaagaatctcgatg 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  taaaattgtttttgttgctattccatagctataaatttgcaactgttaagaatctcgatg 18

                            
Query: 547 taaatatctgatatgga 563
            ||||||||||||||||
Sbjct: 17  caaatatctgatatgga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space:   546756
Effective search space used:   546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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