BAC Information

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BAC

Clone NameMSMg01-503F10
Chromosome18 (Build37)
Map Location 61,358,376 - 61,500,395
singlet/doubletdoublet
Overlap geneSlc26a2, Pde6a, EG667279, Ppargc1b
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik
Downstream geneLOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503F10.T7 (MSMg01no503_f10.b1)MSMg01-503F10.TJ (MSMg01no503_f10.g1)
ACCAG578478AG578479
length711688
length of high quality
(start - end)
444 (84 - 527)239 (61 - 299)
definitionCHROMAT_FILE: MSMg01no503_f10.b1 PHD_FILE: MSMg01no503_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:35 2005CHROMAT_FILE: MSMg01no503_f10.g1 PHD_FILE: MSMg01no503_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,358,376 - 61,358,819)(61,500,157 - 61,500,395)
sequence
NTTCTTTTGTTCCCTTCCCTATATTTGCGTGCGCTAAACGACTCACTATT
TCCCAAGATCCGCGGAATTCTTTGTTTTCCGAGTACGGAGGATCACACAG
AACATTGAAAAACAAACCCCAACCAGCAGGCCTATTTCAGTGCTTAACAG
AGCGGAGGACAGCATAGTCACAAACCAGATAACTGTATCCATTCTGCTTA
GCCTCCACATCTTTGGCAGGTCTCTAAATTTCAGAAGTGCGCCCCGGAGA
TTTACAATAGTGATCACACCAAGGACACATTTTTGAAGGGAATAGAATAA
AGGAGCTATTACCAGAAGGACCAACAAAATGACAAGGGCTGTCACTATAG
CTGACAGCTGCGTCTGGCAGCCTGTTGACTCTTTAACCAATGTCTTTGCA
AGAGCTGCACTAGTAGTTATGCAGTGGAAGAAGGAAGGTATGATATTGCA
AAAGCCAATGGCATACATTTCTTGGTTTGCTTTGACCGTGTAGCCATGTT
TCTTGGCAAACATCTCAGAAAGTGATACAGTGATAGCAAAACCAATGATA
GAAATAGCTATTGTATCTACAGCCACATTAGGAATGAGGCTTCAGTCTGG
TGCTTTGGGTGGCATACACCCAGTGGGAATGTGTCCAGCAATACTGGAAT
TGTAATTCCCATTTATTCTTCCAAAACGAGAAGCCAATGTGGTCGCCACA
ACGACCATGAG
TGTGAGGCCTGGNGGCCGCCTGGTTTCAAAATTAAGGTGAACTATAGATT
TTCCGCAGAATTCTGGGTGTTTTGGGAGTAACTTTTGGAAGGAGGAGAGC
CAGCCGATCGATCTGCAGCTCAAAATAGCTTGGAAGTGCAAGAACAACAG
TAAATAATGGTTTCCGGATGCTTTTAAATCTTGGCATTTCCTGATCTTGG
CTCATCTGGACCAGACAGCTTCATCAGCGTTTACTGCCGAGGCCAGCAAC
ACACGCCTCCACTGGCCGTGATCCAGGCCGAGGCTGCTTTCAAGAAAATC
TTATCTAGAAATGTTTGGACCTCTGGCACAAGTCCTTTGAGTCCTGGACA
TAGAGTAAGGATCAGACAGCATCTGGGCTTGTGTCCTGGGTGGGACTAAA
GGAAAATGTGAGCAAAAAGGCTCAATTCGATGGAGCAAGTGGCTATGACA
TTGGCTCAATCTTAGACAGGCTCCTGAATGCTCTCAGTATTTATTGAGCA
CTTACTGTGTATCAGGTACTAGGGATATCATGCAGATAAATGTTTAATTT
CTCATTATAAATTATAGAAAGCTCAAGATTGAGAAGGCTATGAGAGGATA
CATTCGGGGTCTCTTTGTGGTCCGTATAAACTTCCATAAAGTCGGAAAGG
AAGGAAATAATGTAAGGATGGTTGGGAAGGCCTCTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_f10.b1 MSMg01no503_f10.b1 CHROMAT_FILE:
MSMg01no503_f10.b1 PHD_FILE: MSMg01no503_f10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:35 2005
         (444 letters)



>mm_chr18_61358176_61359019
          Length = 844

 Score =  851 bits (440), Expect = 0.0
 Identities = 443/444 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacggaggatcacacagaacattgaaaaacaaaccccaaccagcaggcctatttcagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tacggaggatcacacagaacattgaaaaacaaaccccaaccagcaggcctatttcagtgc 260

                                                                       
Query: 61  ttaacagagcggaggacagcatagtcacaaaccagataactgtatccattctgcttagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaacagagcggaggacagcatagtcacaaaccagataactgtatccattctgcttagcc 320

                                                                       
Query: 121 tccacatctttggcaggtctctaaatttcagaagtgcgccccggagatttacaatagtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccacatctttggcaggtctctaaatttcagaagtgcgccccggagatttacaatagtga 380

                                                                       
Query: 181 tcacaccaaggacacatttttgaagggaatagaataaaggagctattaccagaaggacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcacaccaaggacacatttttgaagggaatagaataaaggagctattaccagaaggacca 440

                                                                       
Query: 241 acaaaatgacaagggctgtcactatagctgacagctgcgtctggcagcctgttgactctt 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaaaggacaagggctgtcactatagctgacagctgcgtctggcagcctgttgactctt 500

                                                                       
Query: 301 taaccaatgtctttgcaagagctgcactagtagttatgcagtggaagaaggaaggtatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaccaatgtctttgcaagagctgcactagtagttatgcagtggaagaaggaaggtatga 560

                                                                       
Query: 361 tattgcaaaagccaatggcatacatttcttggtttgctttgaccgtgtagccatgtttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tattgcaaaagccaatggcatacatttcttggtttgctttgaccgtgtagccatgtttct 620

                                   
Query: 421 tggcaaacatctcagaaagtgata 444
           ||||||||||||||||||||||||
Sbjct: 621 tggcaaacatctcagaaagtgata 644


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space:   361956
Effective search space used:   361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no503_f10.g1 MSMg01no503_f10.g1 CHROMAT_FILE:
MSMg01no503_f10.g1 PHD_FILE: MSMg01no503_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:35 2005
         (239 letters)



>mm_chr18_61499957_61500595
          Length = 639

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctgggtgttttgggagtaacttttggaaggaggagagccagccgatcgatctgcagct 60
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttctgggtgtttcgggagtaatttttggaaggaggagagccagccgatcgatctgcagct 380

                                                                       
Query: 61  caaaatagcttggaagtgcaagaacaacagtaaataatggtttccggatgcttttaaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caaaatagcttggaagtgcaagaacaacagtaaataatggtttccggatgcttttaaatc 320

                                                                       
Query: 121 ttggcatttcctgatcttggctcatctggaccagacagcttcatcagcgtttactgccga 180
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 319 ttggcatttcctgatcttggctcagctggaccagacagcttcatcagcgtttactgccga 260

                                                                      
Query: 181 ggccagcaacacacgcctccactggccgtgatccaggccgaggctgctttcaagaaaat 239
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggccagcaacacacgcctcccctggccgtgatccaggccgaggctgctttcaagaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)