BAC Information

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BAC

Clone NameMSMg01-503K08
Chromosome18 (Build37)
Map Location 8,962,732 - 8,963,197
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC225134, LOC665132, EG433158, EG545242
Downstream geneLOC665161, Fzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503K08.T7 (MSMg01no503_k08.b1)MSMg01-503K08.TJ (MSMg01no503_k08.g1)
ACCAG578714AG578715
length714720
length of high quality
(start - end)
352 (82 - 433)466 (87 - 552)
definitionCHROMAT_FILE: MSMg01no503_k08.b1 PHD_FILE: MSMg01no503_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:59 2005CHROMAT_FILE: MSMg01no503_k08.g1 PHD_FILE: MSMg01no503_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:59 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTTTCTTTATTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAG
GATCCGCGGAATTCTCACCTGATTTTCCACCGAATGGCAGAGAAGCACCT
GAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CACTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCA
GGTGACATCAGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCA
TTGTTGGTGGGATTGCAAGCTTGTACAATCACTCTGGAAATCAGTCTGGT
GGTTCCTCAGAAAATTCGACATATTACTACCGGAGGATCCAGCAATACCT
CTCCTGGGCATATATCCAGAAGATGTCCCAACCGGCAAGAAGAACACATG
CTCCACTATGTTCATAGCAGCCTTGTTTATAATAGCCAGAAGCTGGAAAG
AACTCAGATGCCCCTCAACAGAGGAATCGGATACCGAAAATGTGGCACAT
TTACACAATGGAATACTACTCAGCCATTAAAAAAATGAATTTATGAAATT
CCCACGCTAGTGTATGGACCTGGAGGGTATCATCCTGAGTGAAGCAACCC
CTTCTCTAATGAACTCTCACAATATGTACTCATTGATACCTGGATAACAC
CCTTTACTCCTTATGATACCCACGATATTTTACTTATCCTGCCTTACGCC
TGTATATCCCCGAA
TTTTTTTTTACGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAATGCAGCATGTT
ACTCACTATTCAACCATACAAAGCACACACTGACTTAGCTGGGTATATTC
ATCTTTGTGTAGAGATTGGGCCTCCATATAATCAGGGCTTGGCCATGGCC
ACGGCTTTACAAGGAACTACTGTGAAAGCAATGCTTTCACAGAAATGAGG
GAATAAAGTATGCTTTAAATGTGGAGGTTTGGGTCATTTAGAAAATGATT
GTTCTAGGAACAGAAGCACCACAGCAGGCTATCTTGCTATGACCCAGGAG
TTTGTCTTCGATCCAGGGAGGATAACCACTTGGCCAGGGAATGTAAATCT
AAGACAGATATTCAGGGCCATCCCATGTCAGGAAACGAGCAGGGGCCTGG
CCTCAGACCCCTAGAGCCAGCCGCACAGCAAGCAGCTTATGGGCTATGAA
GCTGCTACCAGGCCAGGGAAATCCATTTTTGAACTTATCAGGGCAACTCC
AGGAAGTGCAGGATTGGACCTCTCTTTCACCACCCACGTGGTATTATCCC
CAGATAACGGAGTTCAAATGCTGCTTACAAGGTTTTTTGGACCTTTACCT
GCTAAAACTTGGGGATTTCTCCCAGGATAAAGCAGTTCTATTGTAAAAGG
ACTGCATATTTATCCAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_k08.g1 MSMg01no503_k08.g1 CHROMAT_FILE:
MSMg01no503_k08.g1 PHD_FILE: MSMg01no503_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:59 2005
         (466 letters)



>mm_chr18_8962405_8963270
          Length = 866

 Score =  878 bits (454), Expect = 0.0
 Identities = 463/466 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taatgcagcatgttactcactattcaaccatacaaagcacacactgacttagctgggtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 taatgcagcatgttactcactattcaaccatacaaagcacacactgacttagctgggtat 734

                                                                       
Query: 61  attcatctttgtgtagagattgggcctccatataatcagggcttggccatggccacggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 attcatctttgtgtagagattgggcctccatataatcagggcttggccatggccacggct 674

                                                                       
Query: 121 ttacaaggaactactgtgaaagcaatgctttcacagaaatgagggaataaagtatgcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttacaaggaactactgtgaaagcaatgctttcacagaaatgagggaataaagtatgcttt 614

                                                                       
Query: 181 aaatgtggaggtttgggtcatttagaaaatgattgttctaggaacagaagcaccacagca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaatgtggaggtttgggtcatttagaaaatgattgttctaggaacagaagcaccacagca 554

                                                                       
Query: 241 ggctatcttgctatgacccaggagtttgtcttcgatccagggaggataaccacttggcca 300
           ||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggcaatcaggctatgacccaggagtttgtcttcgatccagggaggataaccacttggcca 494

                                                                       
Query: 301 gggaatgtaaatctaagacagatattcagggccatcccatgtcaggaaacgagcaggggc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gggaatgtaaatctaagacagatattcagggccatcccatgtcaggaaacgagcaggggc 434

                                                                       
Query: 361 ctggcctcagacccctagagccagccgcacagcaagcagcttatgggctatgaagctgct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctggcctcagacccctagagccagccgcacagcaagcagcttatgggctatgaagctgct 374

                                                         
Query: 421 accaggccagggaaatccatttttgaacttatcagggcaactccag 466
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 accaggccagggaaatccatttttgaacttatcagggcaactccag 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)