Query= MSMg01no504_i13.b1 MSMg01no504_i13.b1 CHROMAT_FILE:
MSMg01no504_i13.b1 PHD_FILE: MSMg01no504_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:10 2005
(674 letters)
>mm_chr18_45860490_45861564
Length = 1075
Score = 1243 bits (643), Expect = 0.0
Identities = 664/671 (98%), Gaps = 1/671 (0%)
Strand = Plus / Minus
Query: 5 gaattcatggtttcagtactgggtttgaggtttgcttgcttctacagcgtctcagcagac 64
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 gaattcatggtctgagtactgggtttgaggtttgcttgcttctacagcgtctcagcagac 898
Query: 65 agaaatagaaataacataaacatgcctaaacatatataaacagacctctatgtcaccaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 agaaatagaaataacataaacatgcctaaacatatataaacagacctctatgtcaccaag 838
Query: 125 ttctaatccatagtactcttaatgcttaggcttgtacaatgttgttaaacccattttcaa 184
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 837 ttctaatccatagtactcttaatgcttaggcttgtacaatgttgttaaactcattttcaa 778
Query: 185 cacagagaaacctgtctccattgtcctcagaatatttatctacttagctctatagtgagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 cacagagaaacctgtctccattgtcctcagaatatttatctacttagctctatagtgagt 718
Query: 245 catttcagaactactaacttaagccattgaagaaaaaagaaaaaaaaacctataagaact 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 catttcagaactactaacttaagccattgaagaaaaaagaaaaaaaaacctataagaact 658
Query: 305 gtttaataagttgctcagaccaaaattatttagagaaacatccatatttgaatttgtgtt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gtttaataagttgctcagaccaaaattatttagagaaacatccatatttgaatttgtgtt 598
Query: 365 gaattaatgataaattcttttttaattcta-tttttttcaattgagaaattggtgcagtg 423
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 597 gaattaatgataaattcttttttaattctattttttttcaattgagaaattggtgcagtg 538
Query: 424 tattttgcttatattcatctactcttctctccttttctctcacacatattctataatttt 483
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 537 tattttgcttatattcatctacccttctctccttttctctcacacatattctataatttt 478
Query: 484 tctgtttttcttttttctttttgtgatacttttcttttctttgtcctttatttatttatt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tctgtttttcttttttctttttgtgatacttttcttttctttgtcctttatttatttatt 418
Query: 544 tacactcccagttttatttccctgccccatccacgctccaactgttccacatcccatact 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tacactcccagttttatttccctgccccatccacgctccaactgttccacatcccatact 358
Query: 604 tcttctctgccttcctttatcaatgaggatgtccccaccattcacctccacccaaccaga 663
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 357 tcctctctgccttcctttatcaatgaggatgtccccacaattcacctccacccaaccaga 298
Query: 664 cttctacactc 674
|||||||||||
Sbjct: 297 cttctacactc 287
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1075
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1065
Effective search space: 707160
Effective search space used: 707160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no504_i13.g1 MSMg01no504_i13.g1 CHROMAT_FILE:
MSMg01no504_i13.g1 PHD_FILE: MSMg01no504_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:10 2005
(564 letters)
>mm_chr18_45722983_45723938
Length = 956
Score = 942 bits (487), Expect = 0.0
Identities = 540/561 (96%), Gaps = 8/561 (1%)
Strand = Plus / Plus
Query: 1 caactctattgatttatctctgaggtaaggcagcaagtgcgttctggagtatgtccttga 60
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 201 caactctattgatttatctctgaagtaaggcagcaagtgcgttctggagcatgtccttga 260
Query: 61 gtgtaagatatcaagaaggacaatttttatttctacttttcggcatattaaatataaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 gtgtaagatatcaagaaggacaatttttatttctacttttcggcatattaaatatga--- 317
Query: 121 taacgattagagagtgacagctagccagagtgagttactggtgcatgatgtcatttttgc 180
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 318 ---cgattagagagtgacagctagccagggtgagttactggtgcatgatgtcatttt-gc 373
Query: 181 accacgctcaggaaaagtattctaactgaggtcccaacatgttgcctgttagaatctctt 240
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 374 accacgctcaggaaaagtattctaactgaggtcccaacatgttgcccgtgagaatctctt 433
Query: 241 ccccaagcccggggaggccctgacattttcacggagaaccttggaaagcaaggttcagcg 300
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 434 ccccaagcccggggaggccctgacattttcatggagaaccttggaaagcgaggttcagtg 493
Query: 301 tgacctttgataaaatgtttatacacgatgtggcaacatgaaatggctcaggtgactcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgacctttgataaaatgtttatacacgatgtggcaacatgaaatggctcaggtgactcat 553
Query: 361 gggcagaagtgctcggattagagtcgtgcggtggggaggtttttgaagaacactgcacca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gggcagaagtgctcggattagagtcgtgcggtggggaggtttttgaagaacactgcacca 613
Query: 421 tagtacatttcagctttgggggtcatttttcagtaccacagacagctcaaggcatgggct 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tagtacatttcagctttgggggtcatttttcagtaccacagacagctcaaggcatgggcg 673
Query: 481 ccacgtacattcttagttctttcactaattactttcactccacacaaccaaaattgagat 540
||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 674 acacctacattcttagttctttcactaattattttcactccacacaaccaaaattgagat 733
Query: 541 tactgtttcagtttggggttt 561
||||||||||||||||||||
Sbjct: 734 -actgtttcagtttggggttt 753
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 956
Length adjustment: 10
Effective length of query: 554
Effective length of database: 946
Effective search space: 524084
Effective search space used: 524084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
