Query= MSMg01no508_l01.b1 MSMg01no508_l01.b1 CHROMAT_FILE:
MSMg01no508_l01.b1 PHD_FILE: MSMg01no508_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:41 2005
(677 letters)
>mm_chr18_84433409_84434479
Length = 1071
Score = 1222 bits (632), Expect = 0.0
Identities = 658/670 (98%), Gaps = 6/670 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagcaacatttcaatactgactactacatgtttagtgctgaaaatgtttttcta 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagcaacattttaatactgactactacatgtttagtgctgaaaatgtttttcta 263
Query: 64 aatataacccccagcactgaacgcctagcaattcacttccagagtttctgtagtttgtag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatataacccccagcactgaacgcctagcaattcacttccagagtttctgtagtttgtag 323
Query: 124 ctatttatatcccagagtcgcaagcagactttgaacagatgactttgaatgcctgctggg 183
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctatttatatcccagagttgcaagcagactttgaacagatgactttgaatgcctgctggg 383
Query: 184 taaaatgaatgtgcaggcacaccattggtgagcagacgcgtgtgcgccgcttattcacca 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaaatgaatgtgcaggcacaccattggtgagcagacgcgtgtgcgccgcttattcacca 443
Query: 244 aaggcacttcctgaggaggacgaggacggcttgtgcgggtcctgggatggtgggagagtg 303
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 aaggcacttcct------gacgaggacggcgtgtgcgggtcctgggatggtgggagagtg 497
Query: 304 cagagagcccttcagcatggagtaaggtcctagtgcccatgccctgccctggatcccacc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cagagagcccttcagcatggagtaaggtcctagtgcccatgccctgccctggatcccacc 557
Query: 364 ccggaggaaaggcaaagcttaggacgatctactggacttcctcttcacctcttccctttc 423
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 acggaggaaaggcaaagcttaggacgatctactggacttcctcttcacctcttccctttc 617
Query: 424 tcttaagaaagagaacaaacaagtcagcaatcatcatctctttaaaaagtctactctgga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcttaagaaagagaacaaacaagtcagcaatcatcatctctttaaaaagtctactctgga 677
Query: 484 aaaaacaaaggaactaggaatgcagtaagtgtctagcgaggctcaaggaatgctgcctgc 543
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaaaacaaaagaactaggaatgcagtaagtgtctagcgaggctcaaggaatgctgcctgc 737
Query: 544 agcatggcaaaccctgaatggctgaagtgaatgctttcattgagggtcactgccaaagct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 agcatggcaaaccctgaatggctgaagtgaatgctttcattgagggtcactgccaaagct 797
Query: 604 cttctgagagcattatcatgagaggcctatgtcacaatttgccccaaagcttggtcttgt 663
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 798 cttctgagagcattatcatgagaggcctacgtcacaatttgccccaaagcttggtcttgt 857
Query: 664 ccatagatga 673
||||||||||
Sbjct: 858 ccatagatga 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1071
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1061
Effective search space: 707687
Effective search space used: 707687
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no508_l01.g1 MSMg01no508_l01.g1 CHROMAT_FILE:
MSMg01no508_l01.g1 PHD_FILE: MSMg01no508_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:37:41 2005
(470 letters)
>mm_chr18_84572962_84573834
Length = 873
Score = 828 bits (428), Expect = 0.0
Identities = 460/472 (97%), Gaps = 3/472 (0%)
Strand = Plus / Minus
Query: 1 atttctcattaggatgcagagaattttttttttaaacttaccatttgtgtgtctaagggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 atttctcattaggatgcagagaattttttttttaaacttaccatttgtgtgtctaagggt 579
Query: 61 gaatgtatttaatgctggatcataacagttgtgacagaagaaattttagtttctatttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gaatgtatttaatgctggatcataacagttgtgacagaagaaattttagtttctatttca 519
Query: 121 agaacattgggctgcagtaatctcccatcaattgaatctacatggaagaccagtgtgcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agaacattgggctgcagtaatctcccatcaattgaatctacatggaagaccagtgtgcct 459
Query: 181 ttgaaaatggtcatgttttgaatgcttggccaaaacttgttct---tgaagacttcagat 237
|||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct: 458 ttgaaaatggtcatgtttcgagtgcttggccaaaacttgttctccttgaagacttcagat 399
Query: 238 gcttttgttgttttagctactgtggttgtgtcacttgggtcaggctttggaaggaaggtt 297
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 398 gcttttggtgacatagctactgtggttgtgtcacttggggcaggctttggaaggaaggtt 339
Query: 298 atactcattggtggctccagcccgagcttttcctacttggttccacactttgtgaacaaa 357
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 atgctcattggtggctccagcccgagcttttcctacttggttccacactttgtgaacaaa 279
Query: 358 aagtttcatggtcttactgtatagcatgactttcctaccatgatggaaacaaacatgcta 417
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aagtctcatggtcttactgtatagcatgactttcctaccatgatggaaacaaacatgcta 219
Query: 418 atttgactctggggagtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 atttgactctggggagtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 167
Score = 62.6 bits (32), Expect = 6e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 436 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 467
||||||||||||||||||||||||||||||||
Sbjct: 777 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 808
Score = 62.6 bits (32), Expect = 6e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 438 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 469
||||||||||||||||||||||||||||||||
Sbjct: 777 gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 4
Length of query: 470
Length of database: 873
Length adjustment: 10
Effective length of query: 460
Effective length of database: 863
Effective search space: 396980
Effective search space used: 396980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
