NACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATACTGTTCTTGGAGAAGAACTGAACTTGGTTCACAGCATCCA
TATCTGGATGCTCACAACAGGTAGCTTGAGGGGAATTGGACACTTTTTTC
TGCACTCCATTATCTCTAACACTCAGTGTGAACCATCCTAAAACACACAC
ACACACACACACACACACACACACACACACACACAATAGTGGTACCTGTT
CATTGTAATAATAACAGAGCTACAAAGTTGATTCTATATTCTTGTTACTA
ATGGACTAATGCTTTGATAAAACTATGAATTGAAGGTTCTTGGTAGTAAA
TAGATAATTATATGTTTTTTTAAAAAGTTATTGATGACTAAACTGATTAG
AAAATGAGAAGTTAGCAGGGTAGTAGTGGCGCCTGCCTTTAATCCCAGCA
CTTGGGAGGCAGAGGTAGGCGGATTTCTGAGTTGAAGGCCAGCCTGGTCT
ACAGAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCA
AAAAACCAAAAAAAACCCCAAACAAACAAAAAAACCAGACAGACAGACAG
ACAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGTGTGAAAATGTAGATG
ATGGAAGTAATTGGGAAAAATTGAGGAAGAGAGGTTATTTTTTTTTTTTT
TTTTGAGTT

CACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGACTAAAAGGGGCACAGTGAGAA
CGGGTTATAGAACTGATAGTAACAAGCAAAAAAGATTATAGTGCAGTGTC
CTATGCTACCCTGGAGCATTAGGAAAAATAGGGAAAAAAAATAGGGAAAA
AAATTAGGAAAAATAGGGAAAGCATCGGGCACAAGTCAGAAGAACACTTA
TTCTGTTGTCATTTTTGAGACCTATTTATTTTTTATTTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTTAGTTTAGGTTTTATTGNTGNNNNNNNNANNNTT
TGATTTTTTTTATTCCTNNNNGANNANATTTAATTATATCTGGTTTANAG
TTTGAGAGGTTTAGTTTTTTTTATGGTATGATGTTTGGGATTGTTAGGTA
GGTATGGTGTTGGAAGAGTTTTATATTTTGTATTTGAGGAAGTATAATAT
GTTGTGTTTTTTTTTGGATGAAGAATGTAATTATGTAAATTTATAGTTTG
TTTTAAGTGAAATTTTGTTTGTTAAAATGGATTTTTTTGATAATAATGGG
GTTTTTTTTGGATTTATTTTTTTAATAAATTTATTGATTGTTTATTATGT
ATGTATATTTTTTAATATATGTGTTTATGGATATATTATTTGTATTTTTA
AGTTCGTTTTATTTTTTATTTTAGTAGGG

Query= MSMg01no509_f21.b1 MSMg01no509_f21.b1 CHROMAT_FILE:
MSMg01no509_f21.b1 PHD_FILE: MSMg01no509_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:38:35 2005
         (649 letters)



>mm_chr18_10588591_10589639
          Length = 1049

 Score = 1048 bits (542), Expect = 0.0
 Identities = 575/588 (97%), Gaps = 5/588 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatactgttcttggagaagaactgaacttggttcacagcatccatatctggatgc 64
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 gaattcatactgctcttggagaagaactgaacttggttcacagcatccatatctggatgc 695

                                                                       
Query: 65  tcacaacaggtagcttgaggggaattggacacttttttctgcactccattatctctaaca 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 694 tcacaacaggtagcttgaggggaattggacacttttttctgcactccattatctgtaaca 635

                                                                       
Query: 125 ctcagtgtgaaccatcctaaa----acacacacacacacacacacacacacacacacaca 180
           ||||| ||||||| |||||||    |||||||||||||||||||||||||||||||||||
Sbjct: 634 ctcagagtgaaccctcctaaaacacacacacacacacacacacacacacacacacacaca 575

                                                                       
Query: 181 cacacacaatagtggtacctgttcattgtaataataacagagctacaaagttgattctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 cacacacaatagtggtacctgttcattgtaataataacagagctacaaagttgattctat 515

                                                                       
Query: 241 attcttgttactaatggactaatgctttgataaaactatgaattgaaggttcttggtagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 attcttgttactaatggactaatgctttgataaaactatgaattgaaggttcttggtagt 455

                                                                       
Query: 301 aaatagataattatatgtttttttaaaaagttattgatgactaaactgattagaaaatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 aaatagataattatatgtttttttaaaaagttattgatgactaaactgattagaaaatga 395

                                                                       
Query: 361 gaagttagcagggtagtagtggcgcctgcctttaatcccagcacttgggaggcagaggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gaagttagcagggtagtagtggcgcctgcctttaatcccagcacttgggaggcagaggta 335

                                                                       
Query: 421 ggcggatttctgagttgaaggccagcctggtctacagagtgagttccaggacagccaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ggcggatttctgagttgaaggccagcctggtctacagagtgagttccaggacagccaggg 275

                                                                       
Query: 481 ctatacagagaaaccctgtctcaaaaaaccaaaaaaaaccccaaacaaacaaaaaaacca 540
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 274 ctatacagagaaaccctgtctcaaaaaaccaaaaaaa-ccccaaacaaacaaaaaaacca 216

                                                           
Query: 541 gacagacagacagacagagagagagagagaaagagagagagagagaga 588
           ||||| |||| ||| ||||||||||||||| |||||||||||||||||
Sbjct: 215 gacaggcagagagagagagagagagagagagagagagagagagagaga 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 127
Number of extensions: 41
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)