BAC Information

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BAC

Clone NameMSMg01-511O22
Chromosome18 (Build37)
Map Location 57,406,186 - 57,406,724
singlet/doubletsinglet
Overlap geneMegf10
Upstream geneLOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik
Downstream geneLOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-511O22.T7 (MSMg01no511_o22.b1)MSMg01-511O22.TJ (MSMg01no511_o22.g1)
ACCAG585011AG585012
length752756
length of high quality
(start - end)
---539 (76 - 614)
definitionCHROMAT_FILE: MSMg01no511_o22.b1 PHD_FILE: MSMg01no511_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:55 2005CHROMAT_FILE: MSMg01no511_o22.g1 PHD_FILE: MSMg01no511_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:41:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCTTTGTTGTCGCTAATATGACTCTGTTTTTCCAGAGGATCCGCGGAT
TTCTCACATTTTCCCCCCAGAATACTGTAAGAGATCCGCAGGGAATATCG
ACACAGAACGAGGCGCATCCCGTAGGAGTAACTGAGGCAATGGCCGAGGG
GATCTGCACCCATAACACTACTTTGACCTGACAACACATGAGAACAGCAA
GACAAAGCACGGCTCCGGGGACTCGACTTATTAAGTTCGACCGCACCACG
TGCAAACACATTACTGTGCCAACTTATATGCCCTGATAGGCTTTTGACTA
GCTCTCAATTTCATGGATCGTACTGCCTTCATGTAGAGTGTTTTCCTGCC
TACGTTGTATACGGGCTCACAATGACTAGCTCCCATCAGAGGCGACCCAT
TACGCTTTATCAGTACAAAACCTGCCTGATAAATAGCAAGCCGAAGAACA
TTGTGGGTATAGTCCACCATGTCCCGCCCCATTCTCCAGCCCAAAGACAC
GGCTCATACACCATCCTTGCGACCTTTATCAATACCCCTGAAATTCCACC
TCCCTGCCCGTGCCTTATGTTTGTTTATCATCGGGTCCCGTCCCGCCCCC
TATTTCTTTTTTTTCCACACCCTCCCCGTTCTTTATTGCCTCCCTGTCAA
CTACCTGCCCACGTAACTAATCCCCCGTTTTGTCCCCCCTCCCTGTTCAG
CCTTCCTTTCCAAGGGACCGCGAGATTCTTCCTACCAACGTAATACTTCC
TG
CATTGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGGCACAGTGTGTGGTCAGCCCTG
CCCTGAGGGTCGCTTTGGAAAGAACTGTTCCCAAGAATGCCAGTGTCACA
ATGGAGGAACGTGTGATGCTGCCACAGGCCAGTGTCACTGCAGCCCAGGA
TACACAGGGGAACGGTAAGGACACACTCGTGTTTCTCTGACTGCTCATAA
TGAATAAGATTCTAATTATCCTAATTAGAAGGAAAGTTTGGAGAGTCCAG
GGAGTGTACTCAGCATCGTGTGTCTCTAACTGCTATCTAATACTTCAGAA
GCATCCATGAAGCCTAAAAGTGTTCGAAAACCTCTATCCTCATGGAGTGT
ATAGAAACCGAGTCACAGAACAATAATAATGAATTGGAGGAAATCAGAGA
GACGTTAGAAAAAAAGACAATAAAACGTCAGCTGGTCACAACCCATGACA
AAGGTGTCATTTGAAATGTTGAGTGTTCAGCAAGATTTTACTGAAAGGAC
CCTGATATAGCTGTCTCCTGTGAGGCTATGCCGGTGCCTGGCAAACACAG
ACATGGATGCTCACAGTCAGCTATTGGATGGAACACAGGGCCCCCAATGG
AAGAGCTAGAGAAAGTACCCAACGAGCTATAGGGGTCTGCAACCCTATAG
GTGGGACAACAATATGAACTAACAGTATCCCCAGAGCTCGTGTGTCTAGC
TGCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no511_o22.g1 MSMg01no511_o22.g1 CHROMAT_FILE:
MSMg01no511_o22.g1 PHD_FILE: MSMg01no511_o22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:41:55 2005
         (539 letters)



>mm_chr18_57405986_57406924
          Length = 939

 Score =  988 bits (511), Expect = 0.0
 Identities = 532/539 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggcacagtgtgtggtcagccctgccctgagggtcgctttggaaagaactgttcccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggcacagtgtgtggtcagccctgccctgagggtcgctttggaaagaactgttcccaag 260

                                                                       
Query: 61  aatgccagtgtcacaatggaggaacgtgtgatgctgccacaggccagtgtcactgcagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgccagtgtcacaatggaggaacgtgtgatgctgccacaggccagtgtcactgcagcc 320

                                                                       
Query: 121 caggatacacaggggaacggtaaggacacactcgtgtttctctgactgctcataatgaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggatacacaggggaacggtaaggacacactcgtgtttctctgactgctcataatgaat 380

                                                                       
Query: 181 aagattctaattatcctaattagaaggaaagtttggagagtccagggagtgtactcagca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 aagattctaattatcctaattagaaggaaagtttggagagtccagggagtgtgctcagca 440

                                                                       
Query: 241 tcgtgtgtctctaactgctatctaatacttcagaagcatccatgaagcctaaaagtgttc 300
           || ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| 
Sbjct: 441 tcatgtgtctataactgctatctaatacttcagaagcatccatgaagtctaaaagtgttt 500

                                                                       
Query: 301 gaaaacctctatcctcatggagtgtatagaaaccgagtcacagaacaataataatgaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaaacctctatcctcatggagtgtatagaaaccgagtcacagaacaataataatgaatt 560

                                                                       
Query: 361 ggaggaaatcagagagacgttagaaaaaaagacaataaaacgtcagctggtcacaaccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggaggaaatcagagagacgttagaaaaaaagacaataaaacgtcagctggtcacaaccca 620

                                                                       
Query: 421 tgacaaaggtgtcatttgaaatgttgagtgttcagcaagattttactgaaaggaccctga 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 621 tgacaaaggtgtcatttgaaatgttgagtgttcagcaagattttgctgaaaggaccctga 680

                                                                      
Query: 481 tatagctgtctcctgtgaggctatgccggtgcctggcaaacacagacatggatgctcac 539
           |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatagctgtctcttgtgaggctatgccggtgcctggcaaacacagacatggatgctcac 739


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space:   491441
Effective search space used:   491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)