Query= MSMg01no513_a09.b1 MSMg01no513_a09.b1 CHROMAT_FILE:
MSMg01no513_a09.b1 PHD_FILE: MSMg01no513_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:23 2005
(689 letters)
>mm_chr18_44800512_44801599
Length = 1088
Score = 1280 bits (662), Expect = 0.0
Identities = 680/686 (99%), Gaps = 2/686 (0%)
Strand = Plus / Plus
Query: 5 gaattcctctattataggaaattgactcagcaccaattacagaatcattgtgtagtttct 64
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcctctaaaataggaaattgactcagcaccaattacagaatcattgtgtagtttct 263
Query: 65 accagcagtggggataccacgaacatgtcccttccccttccggcaggcaaggtcccactt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 accagcagtggggataccacgaacatgtcccttccccttccggcaggcaaggtcccactt 323
Query: 125 acatataatatcatatccagtatgtcgtagatcaacagagccccatttgctcagcaggtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acatataatatcatatccagtatgtcgtagatcaacagagccccatttgctcagcaggtt 383
Query: 185 ctaacagccacatgtagaagaaggtcatgtatgcgacttgagatcttaggcaacatccta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctaacagccacatgtagaagaaggtcatgtatgcgacttgagatcttaggcaacatccta 443
Query: 245 tggaggtcaggggctctgtgctttattctgcgccgagcctgctacatggtagcatcattc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggaggtcaggggctctgtgctttattctgcgccgagcctgctacatggtagcatcattc 503
Query: 305 tccactggtttttctttgatgtctggtactatattaggtataacagagcagaatgcaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tccactggtttttctttgatgtctggtactatattaggtataacagagcagaatgcaaaa 563
Query: 365 aaaaaaaaaaaaaaaa-cagccacccctgctgctgaaaatgataaacttatgggggaggc 423
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaaaaaaaaaaaaaaacagccacccctgctgctgaaaatgataaacttatgggggaggc 623
Query: 424 aaagtgtaaatatgagaaacaaggcacaaacacattaaaacatatataaatgagtgtgca 483
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 624 aaagtgtaaatatgagaaacaaggcacaaccacattaaaacatatataaatgagtgtgca 683
Query: 484 cacaggaaacccaacatgagtttcacagaatgggtacaaattggcacttggtggttcctt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cacaggaaacccaacatgagtttcacagaatgggtacaaattggcacttggtggttcctt 743
Query: 544 gacaacaaaaaaggctatattcatgaccaaattctattagtcaaggaaaatataaataac 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gacaacaaaaaaggctatattcatgaccaaattctattagtcaaggaaaatataaataac 803
Query: 604 actgtgtgaatgaccatgataacgaagatcaggaacctccttgttcaaatgtaagcggtg 663
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 804 actgtgtgaatgaccatgataacgaagatcaggaaccttct-gttcaaatgtaagcggtg 862
Query: 664 gctggcatcatttgggataggctaag 689
||||||||||||||||||||||||||
Sbjct: 863 gctggcatcatttgggataggctaag 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1088
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1078
Effective search space: 731962
Effective search space used: 731962
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no513_a09.g1 MSMg01no513_a09.g1 CHROMAT_FILE:
MSMg01no513_a09.g1 PHD_FILE: MSMg01no513_a09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:43:23 2005
(570 letters)
>mm_chr18_44986623_44987592
Length = 970
Score = 576 bits (298), Expect = e-168
Identities = 337/358 (94%), Gaps = 17/358 (4%)
Strand = Plus / Minus
Query: 1 ctctgtaccataatctaaaaatggattgtggcccttgcatagacaggctctctaatcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctctgtaccataatctaaaaatggattgtggcccttgcatagacaggctctctaatcttg 327
Query: 61 tgctgtcgtttgcaacatttgaaagtattttagttgctcttgccaaaagtaatgagctac 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgctgtcctttgcaacatttgaaagtattttagttgctcttgccaaaagtaatgagctac 267
Query: 121 tacgaaaatgaacattatcttgtttgttgtcattccttcggcactcacaagtattttttt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 266 tacgaaaatgaacattatcttgtttgttgtcattccttcggcactcacaagtgttttttt 207
Query: 181 ctaatgctgcctggtctacagatcaagttccaggacagcgatggctacatagaaaaaccc 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctaatgttgcctggtctacagatcaagttccaggacagcgatggctacatagaaaaaccc 147
Query: 241 tgtctcaaaaaggaagaaagaaagaaagaaaggaag-----------gaaggaaggaagg 289
|||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 146 tgtctcaaaaaggaagaaagaaagaaagaaagaaagaaagaaagaaagaaggaaggaagg 87
Query: 290 aaggaaggaaggaaggaaggaaggaaggaagga-agaaagaaag--aaagaaa-gaaa 343
||||||||||||||||||||||||||||||||| ||||| ||| ||||||| ||||
Sbjct: 86 aaggaaggaaggaaggaaggaaggaaggaaggagagaaa--aaggaaaagaaaagaaa 31
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 26
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 570
Length of database: 970
Length adjustment: 10
Effective length of query: 560
Effective length of database: 960
Effective search space: 537600
Effective search space used: 537600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
