Query= MSMg01no514_a08.b1 MSMg01no514_a08.b1 CHROMAT_FILE:
MSMg01no514_a08.b1 PHD_FILE: MSMg01no514_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:45 2005
(587 letters)
>mm_chr18_62137247_62138229
Length = 983
Score = 1007 bits (521), Expect = 0.0
Identities = 565/587 (96%), Gaps = 13/587 (2%)
Strand = Plus / Plus
Query: 1 gaattccctagtctgtcccacagtcatcgagagggggagcttccctcccttaagtctttc 60
||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattccctcgtctgtatcacagtcatcgagagggggagcttccctcccttaagtc---- 256
Query: 61 cagttgacctgtgtgttgtttcccacaggcagaggacggtgcaaggctctgatggattat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cagttgacctgtgtgttgtttcccacaggcagaggacggtgcaaggctctgatggattat 316
Query: 121 gagcaggaggaaagagacgaactgtgtttcctccagggtgaaagcattgaagtcattggc 180
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 317 gagcaggaggaaagagacgaactgtgtttcctccagggtgaaagcattgacgtcatcggc 376
Query: 181 tttgtcatacctgggctgcagtggttcattgggaagtcagtgagctcaggagaagtgggc 240
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 377 tttgtcatacctgggctgcagtggttcattgggaagtcagtgagttcaggagaagtgggc 436
Query: 241 tttgtccccaccaggagcatcgatcttgattcctgctccccgatgtgagtatgctttggg 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 437 tttgtccccaccaggagcatcgatcttgattcttgctccccgatgtgagtatgctttggg 496
Query: 301 gcccagctaccttccctagtacttccttctcctctgtcttagtcagggtttctattgctg 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gcccagctgccttccctagtacttccttctcctctgtcttagtcagggtttctattgctg 556
Query: 361 tgacgaaacaccatgaccaaaacataagttagggggtaaagggttcatatggcttacact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tgacgaaacaccatgaccaaaacataagttagggggtaaagggttcatatggcttacact 616
Query: 421 tccagatcatagtccatctttggaagaagtcaggacaggaactcaagcaaggctggaacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tccagatcatagtccatctttggaagaagtcaggacaggaactcaagcaaggctggaacc 676
Query: 481 tagatgcaggagttgatgcagaggccatggaaggctgccactaactggcttgcttcccat 540
|||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 677 tagatg---------atgcagaggccatggaaggctgccgctaactggcttgcttcccat 727
Query: 541 ggcttgctcagcctccttatttatagaactcaggcaccagcccaggg 587
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ggcttgctcagcctccttatttatagaactcaggcaccagcccaggg 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 983
Length adjustment: 10
Effective length of query: 577
Effective length of database: 973
Effective search space: 561421
Effective search space used: 561421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no514_a08.g1 MSMg01no514_a08.g1 CHROMAT_FILE:
MSMg01no514_a08.g1 PHD_FILE: MSMg01no514_a08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:44:45 2005
(480 letters)
>mm_chr18_62311670_62312549
Length = 880
Score = 920 bits (476), Expect = 0.0
Identities = 479/480 (99%)
Strand = Plus / Minus
Query: 1 ctagtggcctgctgcagattgacagttcactgatttggagcctgtagggcaacatgaaat 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 680 ctagtggcctgctgcagattgacagttcgctgatttggagcctgtagggcaacatgaaat 621
Query: 61 gtcactctgtcaagaacatcagtcaatatttgccatgtaagcactgaagagcctaaggcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtcactctgtcaagaacatcagtcaatatttgccatgtaagcactgaagagcctaaggcc 561
Query: 121 tgaaacatagcactctgtagccgtccatcccttccagggaattactgtgctcatagcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgaaacatagcactctgtagccgtccatcccttccagggaattactgtgctcatagcatg 501
Query: 181 tgcaaggccctgtgctaggtcccagcaagaggaaagcacaaggttttgataccaaacatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgcaaggccctgtgctaggtcccagcaagaggaaagcacaaggttttgataccaaacatg 441
Query: 241 ctcatggactaaaacccacaataacaagaacatggaaagatgagtgtggtaattttagtt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctcatggactaaaacccacaataacaagaacatggaaagatgagtgtggtaattttagtt 381
Query: 301 tgtaataatttgcttaaaagatattttgtgatgcattcattcaccttatcttatgaacat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtaataatttgcttaaaagatattttgtgatgcattcattcaccttatcttatgaacat 321
Query: 361 ttaataacttgggacttgggaggtaaaaaaagtactcaacctaaaatcaaaagctggaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttaataacttgggacttgggaggtaaaaaaagtactcaacctaaaatcaaaagctggaga 261
Query: 421 tgaaaccaactgtaaagtctaagatcttaaaaaggaagaggaggaagagggggaggggga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgaaaccaactgtaaagtctaagatcttaaaaaggaagaggaggaagagggggaggggga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 480
Length of database: 880
Length adjustment: 10
Effective length of query: 470
Effective length of database: 870
Effective search space: 408900
Effective search space used: 408900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
