Query= MSMg01no516_g22.b1 MSMg01no516_g22.b1 CHROMAT_FILE:
MSMg01no516_g22.b1 PHD_FILE: MSMg01no516_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:09 2005
(588 letters)
>mm_chr18_27063314_27064300
Length = 987
Score = 1100 bits (569), Expect = 0.0
Identities = 581/585 (99%), Gaps = 1/585 (0%)
Strand = Plus / Plus
Query: 4 ggaattcagatccttggaggaggccattatcttcctgaaccatcacctaccactcaaaac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagatccttggaggaggccattatcttcctgaaccatcacctaccactcaaaac 263
Query: 64 agaaggttctgggcacatgaataatgccacaccaggtcccaagtttaccaattcccacat 123
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 agaaggttctaggcacatgaataatgccacaccaggtcccaagtttaccaattcccacat 323
Query: 124 gtcttcctgtccatctgtgtggcaggactgcagtaagaagccaattatttaagaaggctt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtcttcctgtccatctgtgtggcaggactgcagtaagaagccaattatttaagaaggctt 383
Query: 184 ttgttttgcaggaaggcatctcactgacttctgcaccttaatttatgcctgtagatataa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgttttgcaggaaggcatctcactgacttctgcaccttaatttatgcctgtagatataa 443
Query: 244 tggccacctggttagccttgcctacaaatgtcaacgcacaggaaaacagttctaatccac 303
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 444 tggccacctggttagccttgcctacaaatgtcaacgcacagg-aaacagttctaattcac 502
Query: 304 aaagtcgaacactattaagcaaacaggggtagcaaggttcactttgggccttatttgaca 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaagtcgaacactattaagcaaacaggggtagcaaggttcactttgggccttatttgaca 562
Query: 364 gttattaagattcagccaatgtaagtctttatgaaataaatatttcctgtatccacagtg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gttattaagattcagccaatgtaagtctttatgaaataaatatttcctgtatccacagtg 622
Query: 424 ctgaatagcctagtgctgagggattttagcaatgggcagtcaccaactgcacaatattca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctgaatagcctagtgctgagggattttagcaatgggcagtcaccaactgcacaatattca 682
Query: 484 tgaaggtaaagaagggacttcagcttaagagaatgtgtgatcaatagacaacccgaataa 543
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 683 tgaaggtaaagaagggacttcagcttgagagaatgtgtgatcaatagacaacccgaataa 742
Query: 544 agcagagaggtaggaattatcaaaaaccgtcttttgatcatgtgc 588
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agcagagaggtaggaattatcaaaaaccgtcttttgatcatgtgc 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space: 564706
Effective search space used: 564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no516_g22.g1 MSMg01no516_g22.g1 CHROMAT_FILE:
MSMg01no516_g22.g1 PHD_FILE: MSMg01no516_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:48:10 2005
(516 letters)
>mm_chr18_27183314_27184229
Length = 916
Score = 949 bits (491), Expect = 0.0
Identities = 509/515 (98%)
Strand = Plus / Minus
Query: 1 acaatctagatcagagtcacagagtcatcagagtctgcctattcctcctggatgctctta 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 acaatctagataagagtcacagagtcatcagagtctgcctattcctcctggatgctctta 656
Query: 61 tttaaagtgtacagcaccacaaagagcctgatatttatattttcatttctttttttgctt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ttaaaagtgtacagcaccacaaagagcctgatatttatattttcatttctttttttgctt 596
Query: 121 catgtattaggtgaagtctataattttacctgtgtaataaaagcttagttgttttttctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 catgtattaggtgaagtctataattttacctgtgtaataaaagcttagttgttttttctt 536
Query: 181 tattataaatatctttaaaactgttttatttctcacctgattttctttctccactattga 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 535 tattataaatatctttaaaactgttttatttatcacctgattttctttctccactattga 476
Query: 241 ccataaatgccctgtaataacagaaacagaaaataaagggtcttttattatgctgaaaga 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ccataaatgtcctgtaataacagaaacagaaaataaagggtcttttattatgctgaaaga 416
Query: 301 tgaccttactgtttatatttctgctctaattgcttctcctccccatcttttccactgata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 tgaccttactgtttatatttctgctctaattgcttctcctccccatcttttccactgata 356
Query: 361 cataaactatttccagtaatcacagaaaggcttaaattttcttcaaaatctatgatcttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cataaactatttccagtaatcacagaaaggcttaaattttcttcaaaatctatgatcttc 296
Query: 421 caccaattcaccatgagatatttttgtatgtttctgaatgtctgatatgcaggataccaa 480
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 caccagtttaccatgagatatttttgtatgtttctgaatgtctgatatgcaggataccaa 236
Query: 481 agccatggcacaatagggtgcacttggatgccctc 515
|||||||||||||||||||||||||||||||||||
Sbjct: 235 agccatggcacaatagggtgcacttggatgccctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
