BAC Information

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BAC

Clone NameMSMg01-518A15
Chromosome18 (Build37)
Map Location 56,636,792 - 56,637,442
singlet/doubletsinglet
Overlap geneGramd3
Upstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432
Downstream geneLOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-518A15.T7 (MSMg01no518_a15.b1)MSMg01-518A15.TJ (MSMg01no518_a15.g1)
ACCAG589642AG589643
length737737
length of high quality
(start - end)
657 (49 - 705)658 (80 - 737)
definitionCHROMAT_FILE: MSMg01no518_a15.b1 PHD_FILE: MSMg01no518_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:20 2005CHROMAT_FILE: MSMg01no518_a15.g1 PHD_FILE: MSMg01no518_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:50:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTGTATTGCCTTCCTTCTGTGACAAACAGAAATGCGGAAGTG
TAAGTCAAATAAGCCCTTTCCTCCTCAACATGTGTTTGGCTGTGGTGTTT
CGTCACAGCAGCAGTAAGCCTGGCTAGGACCACCTTTGTCCCTGCCTCGT
GCTGCCCAGCCTCAGTGGGTCCTGTGGAGAAGAACCCACTGCTCCTTTGC
TCTTGTGTCCTTCAGACTTTTAAAGCCAGCACCCTGTAGACAGTGGTGCC
AAGTTCCACAGCCAGCTTGGGATAGGTCCTACACACTTCGAATCCCACCA
GCAGCAGCTTTTGTTGTTGTTGTTGTTGTTGTTTTCTAGAAGGGGGAAAT
GCCTTAGGCTTTCTTTGACCATCTGGAAGTTTCTCTCGGGGTACATCTTG
TCATGAGGGCACCCTTCCCTTGAATCCAGCACCAAGCAGACCTCTCCTTA
ATGGGAAGAATCGTAAAACTTACAGCCCACCCCCAATGACGTACTTCCTG
TAGCAATGCGGCATTTTGTAAACCTCCCCAAACAGTACCAACTGGAGACC
AACTGTTCAAATGCCTGAGATATGACAGACATCTCATCCGAATCACCACA
TTATTAAGGTAGCTAACAGCCTAGAATTTCAAAAGAGCTAATAAAAATTT
TGGATGGTCTCCGTGCAAAGAACTGAAGTGTAAGGTG
NTTTCTATGATTTTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGATTTAGACCTGGGTGGCC
TTGGAACTTGACATCTTCCTTCTCTAGTCTCTTGAGTGTTAGGCTTAGAG
GCACATACCGCCCGGCCCAGCTCCAGAGTCATCTTTAGTAGAATAAAGCG
GGGGCGGGGGGAGGGGGACGCATCTCAGATGTGTTTTCAATTCAAAGTCT
TAGAGACTTAGAATAAGAGTAAAAATGGGAGGCCAAGTCTACCACTGCCC
CCTAGAAACCAAGCATGATGTTTTAGAAACCTCTCCAATCGGCAATCGGG
TGTCACTTGCGTGTAAAGATGAGCACTCTTCCCAGGAACCTAGTGACTCA
CTGAGGATGGTCTCACTTGAGGGAAGATGGTAGGAACCAACCTCTTGACT
TAGCAAGTATACACGCAGAGAGGCTAGAGTTGTGGGTCTCGTGATGAGCC
ACATGCTGAGCTGTCATGCTGGGAAGCAGCTTGGGTGTGCCCATGGTGCT
CTGCTCCGCATAGCACAGGCGTGACTACTTCTGTACACTGGGAACTGTGC
TCTCGTTTAGCCTCCTGTGGTAGCCTTTCCTGCCCGAGGCTGGTTGTCCC
AAATCTCAGGATGACTCACTCACAAACATTACAGCATGAATGGAAATAGC
AAGGGGACCTTTGGGGAACGTTCCTGGATGACTCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no518_a15.g1 MSMg01no518_a15.g1 CHROMAT_FILE:
MSMg01no518_a15.g1 PHD_FILE: MSMg01no518_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:50:20 2005
         (658 letters)



>mm_chr18_56636592_56637642
          Length = 1051

 Score = 1164 bits (602), Expect = 0.0
 Identities = 642/658 (97%), Gaps = 7/658 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagatttagacctgggtggccttggaacttgacatcttccttctctagtctcttgagtgt 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 aagatttagacccgggtggccttggaacttgacatcttccttctctagtctcttgagtgt 792

                                                                       
Query: 61  taggcttagaggcacataccgcccggcccagctccagagtcatctttagtagaataaagc 120
           |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 taggctcagaggcacatactgcccggcccagctccagagtcatctttagtagaataaagc 732

                                                                       
Query: 121 gggggcggggggagggggacgcatctcagatgtgttttcaattcaaagtcttagagactt 180
            | |||||     ||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 731 -gaggcgg-----ggggg-cgcgtctcagatgtgttttcaattcaaagtcttagagactt 679

                                                                       
Query: 181 agaataagagtaaaaatgggaggccaagtctaccactgccccctagaaaccaagcatgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agaataagagtaaaaatgggaggccaagtctaccactgccccctagaaaccaagcatgat 619

                                                                       
Query: 241 gttttagaaacctctccaatcggcaatcgggtgtcacttgcgtgtaaagatgagcactct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 618 gttttagaaacctctccaatcggcaatcgggtgtcacttgcgtgtaaagatgaacgctct 559

                                                                       
Query: 301 tcccaggaacctagtgactcactgaggatggtctcacttgagggaagatggtaggaacca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tcccaggaacctagtgactcactgaggatggtctcacttgagggaagatggtaggaacca 499

                                                                       
Query: 361 acctcttgacttagcaagtatacacgcagagaggctagagttgtgggtctcgtgatgagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 acctcttgacttagcaagtatacacgcagagaggctagagttgtgggtctcgtgatgagc 439

                                                                       
Query: 421 cacatgctgagctgtcatgctgggaagcagcttgggtgtgcccatggtgctctgctccgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cacatgctgagctgtcatgctgggaagcagcttgggtgtgcccatggtgctctgctccgc 379

                                                                       
Query: 481 atagcacaggcgtgactacttctgtacactgggaactgtgctctcgtttagcctcctgtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 atagcacaggcgtgactacttctgtacactgggaactgtgctctcgtttagcctcctgtg 319

                                                                       
Query: 541 gtagcctttcctgcccgaggctggttgtcccaaatctcaggatgactcactcacaaacat 600
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gcagcctttcctgcccgaggctggttgtcccaaatctcaggatgactcactcacaaacat 259

                                                                     
Query: 601 tacagcatgaatggaaatagcaaggggacctttggggaacgttcctggatgactccgt 658
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tacagcatgaatggaaatggcaaggggacctttggggaacgttcctggatgactccgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1051
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1041
Effective search space:   674568
Effective search space used:   674568
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)