Query= MSMg01no518_p05.b1 MSMg01no518_p05.b1 CHROMAT_FILE:
MSMg01no518_p05.b1 PHD_FILE: MSMg01no518_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:31 2005
(675 letters)
>mm_chr18_58272500_58273575
Length = 1076
Score = 1133 bits (586), Expect = 0.0
Identities = 648/674 (96%), Gaps = 11/674 (1%)
Strand = Plus / Plus
Query: 4 ggaattcttgatgggatataaggtcaacaaccagttaaggggccccaggctgcagagagt 63
|||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 212 ggaatttttgatgggatataagggcagcaaccagttaaggggccccaggctgcagagagt 271
Query: 64 ggcatacataccaggaaaacagcacagaaattccttttaattccatagaccttaaacatt 123
|||| |||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct: 272 ggca---------ggaaaacagcacagaaattccttttacttcaacagaccttaaacatt 322
Query: 124 tgtattcagtcccatttgtttgtatggactcccagctaactaaagaaagatggagaaggc 183
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 323 tgtattcagccccatttgtttgtatgggctcccagctaactaaagaaagatggagaaggc 382
Query: 184 ttaaagaatgtgaacttacctatacaatctccattagcgtcctgcttgtagcccatatta 243
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 383 ttaaagaatgtgaacttacctatacaatctccattagcatcctgcttgtagcccatatta 442
Query: 244 cactcgcatctgtagctagaaacagtaggtatgcaccgtccattcaaacagagattggca 303
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 443 cactcgcatctgtagctagaaacagtaggtatacaccgtccattcaaacagagattggca 502
Query: 304 tggtgcttacagatgtctattgtctggttgagaattgctacggaaaattaaaacaaagca 363
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 503 tggtgcttacagatgtctattgtctggttgagaattgctacggaaaattgaaacaaaaca 562
Query: 364 tacagggtcattacaacatgtattatatatgcaaactaatttttt-agacgtttaataga 422
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct: 563 tacagggtcattacaacatgtattatatatgcaaactaatttttttagaagtttaataga 622
Query: 423 aattaattaaatttgtatcagaagcctgcattactctgtattttattaaattatattttt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aattaattaaatttgtatcagaagcctgcattactctgtattttattaaattatattttt 682
Query: 483 caatttggggggttatgaaaaatatacatgtatacttttctcgtagtcattctttgtgag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 caatttggggggttatgaaaaatatacatgtatacttttctcgtagtcattctttgtgag 742
Query: 543 cctcacattttttattaagcttttgtatggaggatcttaaaaataaatacttgaggcaca 602
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 cctcacattttctattaagcttttgtatggaggatcttaaaaataaatacttgaggcaca 802
Query: 603 ggcctgaagttgcatctgtaagtcacacatctggaaattttgcttgtgtctttttgaaaa 662
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 803 ggcctgaagttgcatctgtaagtcacacatctggaaactttgcttgtgtctttttgaaaa 862
Query: 663 -tgtcaggaatgtt 675
|||||||||||||
Sbjct: 863 atgtcaggaatgtt 876
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1076
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1066
Effective search space: 708890
Effective search space used: 708890
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no518_p05.g1 MSMg01no518_p05.g1 CHROMAT_FILE:
MSMg01no518_p05.g1 PHD_FILE: MSMg01no518_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:51:31 2005
(618 letters)
>mm_chr18_58408823_58409840
Length = 1018
Score = 1081 bits (559), Expect = 0.0
Identities = 577/583 (98%), Gaps = 1/583 (0%)
Strand = Plus / Minus
Query: 1 tggactgatttctttttgtcacaggcataagatgggaacaattccctcttagaattacag 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tggactgatttctttttgttacaggcataagatgggaacaattccctcttagaattacag 523
Query: 61 aagcattgtaataacaggaatttcataaacatatagattttatagcagtatatgtttcta 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aagcattgtaacaacaggaatttcataaacatatagattttatagcagtatatgtttcta 463
Query: 121 ttctcaaattttgagaactataaagacacgaataagaactctaggtatcccagaaggttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttctcaaattttgagaactataaagacacgaataagaactctaggtatcccagaaggttg 403
Query: 181 tatatgatatagaccaactaagtcttatactacaattcttttaagtgtatttttaacaca 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 402 tatatgatatagaccaactaagtcttatattacaattcttttaagtgtatttttaaaaca 343
Query: 241 gaatatgctcctagaacaaccgcatgacattccttctcaaatttactataaaacattggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gaatatgctcctagaacaaccgcatgacattccttctcaaatttactataaaacattggt 283
Query: 301 gaaagttaggaaattgtgagcacaagtatttcaatcttcatattaccatgttctttttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gaaagttaggaaattgtgagcacaagtatttcaatcttcatattaccatgttctttttat 223
Query: 361 accccaactttaaaattagaacttttattttttaaatataaaaaaatgcttaaaagctcc 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 222 accccaactttaaaattagaacttttattttttaaatat-aaaaaatgcttaaaagctcc 164
Query: 421 acttgtccttcaaagtcccatagttacataattttagtgaatattatgatgatttgagag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 acttgtccttcaaagtcccatagttacataattttagtgaatattatgatgatttgagag 104
Query: 481 cagattctagagagaagtttcctaagtcatttctattatttatatttcatgtgcgactag 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 cagattctagagagaagtttcctaagtcatttctattatttatatttcatgtgcgactag 44
Query: 541 acagaaagtaatattccccatgagtccccaagcaatggtttta 583
|||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 43 acagaaagtaatattccccatgagcccccaagcaatggtttta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
