Query= MSMg01no519_i22.b1 MSMg01no519_i22.b1 CHROMAT_FILE:
MSMg01no519_i22.b1 PHD_FILE: MSMg01no519_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:18 2005
(571 letters)
>mm_chr18_59618807_59619780
Length = 974
Score = 851 bits (440), Expect = 0.0
Identities = 465/476 (97%), Gaps = 6/476 (1%)
Strand = Plus / Minus
Query: 102 tctcattcttgtggatcagatacaagctctcaggtacttctttgccaccatttctggctt 161
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 974 tctcattcttgtggatcagatacaagctctcaggtacttctttggcaccatttctggctt 915
Query: 162 cttgctgctttgctccttgccatgatggccatagagtcaccctgtgaaattgtaagaccc 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 914 cttgctgctttgctccttgccatgatggccatagagtcaccctgtgaaattgtaacaccc 855
Query: 222 caatttaatg---tttttttttcaaaataaatttccttgctcatggtgtctcttcacagc 278
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 854 caatttaatgctttttttttttcaaaataaatttccttactcatggtgtctcttcacagc 795
Query: 279 aatagaaaataactaggacaatgtaatattggattggtgacaccctctgcaggga---tt 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 794 aatagaaaataactaggacaatgtaatattggattggtgacaccctctgcagggattttt 735
Query: 336 tttttttgactaattcaataaggacatacaaacttgacacaggttttagaaacttcctct 395
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 734 tttttttgactaattcaataaagacacacaaacttgacacaggttttagaaacttcctct 675
Query: 396 acttcctagagtttctgaacctggggtgtttgagccctcaaacttctgttatctttgata 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 acttcctagagtttctgaacctggggtgtttgagccctcaaacttctgttatctttgata 615
Query: 456 aaagaatgcatcagtctcttgatcctaacttattatacatgtgagatcaaataaaggcaa 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aaagaatgcatcagtctcttgatcctaacttattatacatgtgagatcaaataaaggcaa 555
Query: 516 gaagaggtcaaataaattctgaagtagaagcaaaaggtggaggatccattgcagtt 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gaagaggtcaaataaattctgaagtagaagcaaaaggtggaggatccattgcagtt 499
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 974
Length adjustment: 10
Effective length of query: 561
Effective length of database: 964
Effective search space: 540804
Effective search space used: 540804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no519_i22.g1 MSMg01no519_i22.g1 CHROMAT_FILE:
MSMg01no519_i22.g1 PHD_FILE: MSMg01no519_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:52:18 2005
(579 letters)
>mm_chr18_59448497_59449474
Length = 978
Score = 1058 bits (547), Expect = 0.0
Identities = 571/579 (98%), Gaps = 1/579 (0%)
Strand = Plus / Plus
Query: 1 ataatacagtaaccaacaacaaccatgattgaaaaatagtgtcactcaaaacagagaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatacagtaaccaacaacaaccatgattgaaaaatagtgtcactcaaaacagagaata 260
Query: 61 aatatggtgatggagagaacttaagaaagaagagcatcgtaagtataagagaatgtagcc 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 aatatggtgatggagagaacttaagaaagaagagcatcgtaagtataagacaatgtagcc 320
Query: 121 aactgtaatgctttaaatgaaaatttaaagtctaaatgatgtttataattaaccgccagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactgtaatgctttaaatgaaaatttaaagtctaaatgatgtttataattaaccgccagg 380
Query: 181 cagtggtggcccacacctttaatccctgcacttgggaggcagaggcaggcagatttctga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 cagtggtggcccacacctttaatccctgcacttgggaggcagaggcaggcaggtttctga 440
Query: 241 gtgcaaggccagcctagtctacagaatgagtttcaggacagccagggctacacagaaaaa 300
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgcaaggccagcctggtctacagaatgagtttcaggacagccagggctacacagaaaaa 500
Query: 301 ccctgtcttcaaaaaccaaaaaataaataagtaagtgagtaagtaagtaaaattaaccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccctgtcttcaaaaaccaaaaaataaataagtaagtgagtaagtaagtaaaattaaccaa 560
Query: 361 aagcactacttagcaaaactatcttcatagaagccagaaaccaaatttctatattttaaa 420
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 aagcactacttagcaaaactatcttcatagaagccagcaaccaaatttctatattttaaa 620
Query: 421 tacatttcatcacttaaatttatctaatatataaatatgtgggtggatngggaaggggtg 480
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 tacatttcttcacttaaatttatctaatatataaatatgtgggtggat-gggaaggggtg 679
Query: 481 agcatggaggccagaagctccagatactttggatctggagttataggcagctaaggacca 540
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 680 agcatggaggccagaagcaccagatactttggatctggagttataggcagctaaggacta 739
Query: 541 tgtgacatggataatgggaaacaaactcagatcttctgc 579
|||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgtgacatggataatgggaaacaaactcagatcttctgc 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 978
Length adjustment: 10
Effective length of query: 569
Effective length of database: 968
Effective search space: 550792
Effective search space used: 550792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
