NNNCCTTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTTTTTCCTCTAGGACCCTGACATATATAAAGCTATGACC
TTTATGATGGCTCTGAGACCTGGCTTATGAGTGAAAGCCAGGATGGGACA
TGTAGTGTGTGCTGGTCTTGACACTGCCTCCCAACCTCCCTTACTCTAAT
TCTTGTCTGCAGTTTGTGAAAATGCCCTCTGTGCCATATACCCATTAGAT
GCCTATAGTCAGTGTCACAGCTGTATTTTAGAAATCAAAAAGTAAGAACT
TCTACCTTCCCCAGGTAACTGTTCTCAGAATCATGGAAAGATGGAAAAGA
CAGTAGTAATCGTGTAGCCACTCTAGACAGAGTCAGATTTATGTTACATA
GGAAATGAGAACAGGAACTTAGGCATGCCTGCTTCAAATGTTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTGT
GTGTGCGTGTGTTCAGTTTTTATGCTTTGATGGTGAACTTCTAATTTCAT
TACTAGTTAGTGCCCTGACCATGCCAGAATTTATTCCTGGCACTCTGTCT
TGTGTATTAACTGTGTCTCCCCTTCCTTCCCACTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCCTTCT
TTCTTTCCTTCTTTCCTTCTTTCCTTCATTCATTCTTTCCTTCTTTCTTT
CATTCCTTCTTTCTTTCCTA

TTAAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGCAGCTGTAACAATATG
CTTTTGGCACAAACAGGCTCATGCTAGACAAAACCCCAGCATGAAGATGT
GAGAAGAGCATGTATTCCTACCCTATAACTTCTGGGAGATGCAAAGTTAG
TTTTCTTTAGAGGTGTGAACCCTAGTAGCTTTACCATGCTCCAGTCAAGC
CCACCCATATAAGAAGCAGAAACAGTATTTGGTGTGTATGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGNGTATTTATATATATTAATATA
TTATTTTATATTTATTTTTTTTATTATTTTATATTTTATTTTATTTAATT
TTTTATTTATTAAAATTNATAATAAATTATANATAATAAATAATATTAAN
NATAAAAAAAATTTTTATTTATTTTTTAATATAATTATTATTTTTTTATA
TATTTTTTTATTTTTTTTTTTTTAATTTTATATAATATTATATTTTATTT
TATTTTTTTTTTATTATATTTTTTTTTTTTTATTTTTTAATTTATTTTTA
TTTTATATTTTATTAATTTTTTAATATATTTTTATATTTATATATTATTT
TTTTTTATTTTTTTATTTTATAATTTATATATTATTTAATTTTTTATTTT
TTATATNTTATAATTTAATTAAAATTTTATTATTAATACTTNTTTCTTAT
TTATTTATTATTATTTATTTTTTTACTTTATAATA

Query= MSMg01no520_d21.b1 MSMg01no520_d21.b1 CHROMAT_FILE:
MSMg01no520_d21.b1 PHD_FILE: MSMg01no520_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:14 2005
         (617 letters)



>mm_chr18_85669161_85670177
          Length = 1017

 Score =  973 bits (503), Expect = 0.0
 Identities = 575/617 (93%), Gaps = 30/617 (4%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttttcctctaggaccctgacatatataaagctatgacctttatgatggctc 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 205 gaattcactttttcctctaggaccctgacatatgtaaagctatgacctttatgatggctc 264

                                                                       
Query: 65  tgagacctggcttatgagtgaaagccaggatgggacatgtagtgtgtgctggtcttgaca 124
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgagacctggcctatgagtgaaagccaggatgggacatgtagtgtgtgctggtcttgaca 324

                                                                       
Query: 125 ctgcctcccaacctcccttactctaattcttgtctgcagtttgtgaaaatgccctctgtg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgcctcccaacctcccttactctaattcttgtctgcagtttgtgaaaatgccctctgtg 384

                                                                       
Query: 185 ccatatacccattagatgcctatagtcagtgtcacagctgtattttagaaatcaaaaagt 244
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 ccatatacccattagatgcctatagccagtgtcacagctgtattttagaaatcaaaaagt 444

                                                                       
Query: 245 aagaacttctaccttccccaggtaactgttctcagaatcatggaaagatggaaaagacag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagaacttctaccttccccaggtaactgttctcagaatcatggaaagatggaaaagacag 504

                                                                       
Query: 305 tagtaatcgtgtagccactctagacagagtcagatttatgttacataggaaatgagaaca 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tagtaattgtgtagccactctagacagagtcagatttatgttacataggaaatgagaaca 564

                                                                       
Query: 365 ggaacttaggcatgcctgcttcaaatgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 424
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 565 ggaacttaggcatgcctgcttcaaatgttttgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 624

                                                                       
Query: 425 tgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgcgtgtgttcagtttttatgctttgatgg 484
           ||||||||||                          ||||||||||||||||||||||||
Sbjct: 625 tgtgtgtgtg--------------------------tgttcagtttttatgctttgatgg 658

                                                                       
Query: 485 tgaacttctaatttcattactagttagtgccctgaccatgccagaatttattcctggcac 544
           || |||||||||||  ||||||||||||| |||||||||||||||||||| ||| |||||
Sbjct: 659 tggacttctaattttgttactagttagtgtcctgaccatgccagaatttactcccggcac 718

                                                                       
Query: 545 --tctgtcttgtgtattaactgtgtctccccttccttcccactctttctttctttctttc 602
             |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 719 actctgtcttgtgtattaactgtgtctccccttccttcccacactttctttctttctttc 778

                            
Query: 603 t--ttctttctttcttt 617
           |  ||||||||||||||
Sbjct: 779 tctttctttctttcttt 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space:   611249
Effective search space used:   611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)