Query= MSMg01no520_j19.b1 MSMg01no520_j19.b1 CHROMAT_FILE:
MSMg01no520_j19.b1 PHD_FILE: MSMg01no520_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:42 2005
(695 letters)
>mm_chr18_34472408_34473505
Length = 1098
Score = 1311 bits (678), Expect = 0.0
Identities = 690/694 (99%), Gaps = 3/694 (0%)
Strand = Plus / Minus
Query: 5 gaattctttgag-atg-aaatgatggtttttgtgaggaag-aatgtcagtggcatatttt 61
|||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 898 gaattctttgagaatgaaaatgatggtttttgtgaggaagaaatgtcagtggcatatttt 839
Query: 62 aaactataatcaataggctgatccacatgatgtttctcttcattatattttatgctataa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 aaactataatcaataggctgatccacatgatgtttctcttcattatattttatgctataa 779
Query: 122 tttgtcggtctctcttcttcttcttcatgttgttcttcctcagaataacgttcactgtag 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tttgtcggtctctcttcttcttcttcatgttgttcttcctcagaataacgttcactgtag 719
Query: 182 ttggtaggtttatcatcttcataatcatcttcctgacacagagactggtttacattttga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttggtaggtttatcatcttcataatcatcttcctgacacagagactggtttacattttga 659
Query: 242 ttaattgtatgactagaacccattcgatttgtttctgaaccactggttccccttgaccta 301
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 ttaattgcatgactagaacccattcgatttgtttctgaaccactggttccccttgaccta 599
Query: 302 tatggggaaacacattcttgttgtccaaaatgtggttggaatttgaggtgtttgtcatcg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tatggggaaacacattcttgttgtccaaaatgtggttggaatttgaggtgtttgtcatcg 539
Query: 362 gtattctcagaatagacaggataactggtgttctggcttcttgcttgtctttgctcgttt 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gtattctcagaatagacaggataactggtgttctggcttcttgcttgtctttgctcgttt 479
Query: 422 tgctttatttcatcttctatcacatgctttggtcttgcccacctttcattctgtgaggga 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgctttatttcatcttctatcacatgctttggtcttgcccacctttcattctgtgaggga 419
Query: 482 ctctgccttcctgagttcaactgctcatctgaatatttaagactgtaatttattggtgta 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctctgccttcctgagttcaactgctcatctgaatatttaagactgtaatttattggtgta 359
Query: 542 tccagttctccatcattatcatccatatgatttgcactgtgtatcttatgggctaggtca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tccagttctccatcattatcatccatatgatttgcactgtgtatcttatgggctaggtca 299
Query: 602 gctggatactgaccataactgcaaaatttactttcatcatcttcagaataggattcaact 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gctggatactgaccataactgcaaaatttactttcatcatcttcagaataggattcaact 239
Query: 662 gagggtttcatttggcctcttttaccatatccat 695
||||||||||||||||||||||||||||||||||
Sbjct: 238 gagggtttcatttggcctcttttaccatatccat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1098
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1088
Effective search space: 745280
Effective search space used: 745280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_j19.g1 MSMg01no520_j19.g1 CHROMAT_FILE:
MSMg01no520_j19.g1 PHD_FILE: MSMg01no520_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:42 2005
(566 letters)
>mm_chr18_34329267_34330232
Length = 966
Score = 946 bits (489), Expect = 0.0
Identities = 533/566 (94%), Gaps = 28/566 (4%)
Strand = Plus / Plus
Query: 1 tgtaatgggaataacatgcctttccagtgagaaatcattccacagacttaaaagattaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtaatgggaataacatgcctttccagtgagaaatcattccacagacttaaaagattaat 260
Query: 61 aaaaggctgggtggcagtggcacacacagttaatcccagcactcgggaggcagaggcagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaggctgggtggcagtggcacacacagttaatcccagcactcgggaggcagaggcagg 320
Query: 121 tggatctctgagttcaaggtcagcctggtctacaaagtgagttccaggacagccagggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggatctctgagttcaaggtcagcctggtctacaaagtgagttccaggacagccagggct 380
Query: 181 acacagaaaaaccctgcctttgaaaaacaaaaaacaagacagagaaagaagggggaagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacagaaaaaccctgcctttgaaaaacaaaaaacaagacagagaaagaagggggaagat 440
Query: 241 atttactgggggttgggagcagagcatgctagcagctgtggcaaatgcccaaagaagagc 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 atttactgggggttgggagcagagcatgctagcagctgtggcaaatgaccaaagaagagc 500
Query: 301 tgacctcagataaaagattttactaacatgtacatatgtgtgtgtgtgtgtgtgtgtgtg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacctcagataaaagattttactaacatgtacatatgtgtgtgtgtgtgt--------- 551
Query: 361 tgtgtgtgtgtgtgtctgtctgtctgtctgtctgtcttangcttgtgcattttacataca 420
|||||||||||||||||||| ||||||||||||||||||||
Sbjct: 552 -------------------ctgtctgtctgtctgtcttaggcttgtgcattttacataca 592
Query: 421 ctgtcatccttaaatctcttttaggtctgagccccaggttataccttcaatagttttaac 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 593 ctgtcatccttaaatctcttttaggtctgagccccaggttataccttcaacagttttaac 652
Query: 481 agagataggagatggtcactcaggcagatggaaaatttacatagtaaagattttgccaaa 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 653 agagataggagatggtcactctggcagatggaaaatttacatagtaaagattttgccaaa 712
Query: 541 attattttttaagtacatttttgagg 566
||||||||||||||||||| ||||||
Sbjct: 713 attattttttaagtacattgttgagg 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 966
Length adjustment: 10
Effective length of query: 556
Effective length of database: 956
Effective search space: 531536
Effective search space used: 531536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
