Query= MSMg01no520_l06.b1 MSMg01no520_l06.b1 CHROMAT_FILE:
MSMg01no520_l06.b1 PHD_FILE: MSMg01no520_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:49 2005
(651 letters)
>mm_chr18_43106027_43107077
Length = 1051
Score = 1174 bits (607), Expect = 0.0
Identities = 637/647 (98%)
Strand = Plus / Minus
Query: 5 gaattcctcaaagccatgactggacttgttacagttccaagacagaatatgatgaactgt 64
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 851 gaattcctcaaagccaagactggactcgttacagttccaagacagaatatgatgaactgt 792
Query: 65 aattaaaacagcattcacttgaatgcccatgtggacattttggtacacttaatgcagctg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 791 aattaaaacagcattcacttgaatgcccatgtggacattttggtacacttaatgtagctg 732
Query: 125 taggtagacacactgtctccagctgcccctctgatccctaaaaccgctttaaggcaccag 184
|||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 731 taggtagacacactgtttccagctgcctctctgatccctaaaaccactttaaggcaccag 672
Query: 185 aagctgtagtagccctgacagatatagttttacctgctcctccttgaggggattaaacct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 aagctgtagtagccctgacagatatagttttacctgctcctccttgaggggattaaacct 612
Query: 245 ccctgtgagacatctcttgacaggtactaggtgacttgtttccctctcctcactgttctg 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 611 ccctgtgagacatctcttgacaggtactaggtgactagtttccctctcctcactgttctg 552
Query: 305 tgaccttgttgatcacagtcataactgtgtgcatgaagtagcacacaatggggatgagag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tgaccttgttgatcacagtcataactgtgtgcatgaagtagcacacaatggggatgagag 492
Query: 365 gattcagccctggacagctggcctcttgaggcacctattgtccaaaggtttggcatctta 424
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 491 gattcagccctggatagctggcctcttgaggcacctattatccaaaggtttggcatctta 432
Query: 425 gacatttcaatttagtccataaaacaaagataggtggcttaaaaggggatgtgatgataa 484
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 431 gacatttcaatttagtccataaaacaaagataggtggcttaaagggggatgtgatgataa 372
Query: 485 tctagtacccagatgagtttgaaatggaaaacctaactcactggagatggatttgaacta 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tctagtacccagatgagtttgaaatggaaaacctaactcactggagatggatttgaacta 312
Query: 545 gcacaaggaggaaccatcggtggtgggcagaaaaaagtgatgtggtatgaacagttacta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gcacaaggaggaaccatcggtggtgggcagaaaaaagtgatgtggtatgaacagttacta 252
Query: 605 aatagatggactgagcctttccaaacgacttagcagagacatactga 651
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aatagatggactgagcctttccaaacgacttagcagagacatactga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 651
Length of database: 1051
Length adjustment: 10
Effective length of query: 641
Effective length of database: 1041
Effective search space: 667281
Effective search space used: 667281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no520_l06.g1 MSMg01no520_l06.g1 CHROMAT_FILE:
MSMg01no520_l06.g1 PHD_FILE: MSMg01no520_l06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:53:49 2005
(677 letters)
>mm_chr18_42922533_42923606
Length = 1074
Score = 1123 bits (581), Expect = 0.0
Identities = 652/677 (96%), Gaps = 3/677 (0%)
Strand = Plus / Plus
Query: 1 ccaccccccaaagagcttatagccctaatatttcccatttatttattcacttttcccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ccaccccccaaagagcttatagccctaatatttcccatttatttattcactttccccact 260
Query: 61 agactctaataggtagtgtctgttctgtttatggcttatccctttgtctggcacatcacg 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 agactctaataggtagtgtctgttctgttcatggcttatccctttgtctggcacatcacg 320
Query: 121 ttggtggtggggcacaacagaaaattaaaacaagaagtctatgagtggtaacccagaggc 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 ttggtggtggggcacaacagaaaattaaaacaagaagtctatgagtggtaacacagaggc 380
Query: 181 acagaagtcttcttcaaattaattagaaacattcaaggccctcaattatctcctgcccca 240
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 381 acagaagtcttcttcaaattaattaggaacattcaaggccctcaattttctcctgcccca 440
Query: 241 actcctgctctctttctgtcctgcaagcaacaaagggttaaaatgactattctgcttatg 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 actcctgctctctttctgtcctgcaagcaacaaagggttaaaaggactattctgcttatg 500
Query: 301 ggaggagggatgaggaacgtgcatcatgggaagaatactgtctccaccaccacatagcca 360
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 ggaggagggatgagaaacatgcatcatgggaagaatactgtctccaccaccacatatcca 560
Query: 361 catagcttggagtctagtcaccaggcaccaaaatcaggaagaaaagcgacagccatccat 420
||||||||||| | || | |||||| ||||||||||||||||| |||||||||||||
Sbjct: 561 catagcttggaataaag---ctaggcactaaaatcaggaagaaaagtgacagccatccat 617
Query: 421 ttggagcagtggttttaaatctatgggttgtgacctattaaacctctatggacaaaaaga 480
|| ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct: 618 ttagagcagtggttttcaacctatgggttgtgacctattaaacctatatggacaaaaaga 677
Query: 481 tttacattacaattcataacagtagcagaattacttatgaagtagggatgaaaatatttt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttacattacaattcataacagtagcagaattacttatgaagtagggatgaaaatatttt 737
Query: 541 tacggttggggtgtcaccataacatgagggactgtattataaggtcacagcattaggacc 600
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 738 tacggttggggtgtcaccataacatgaggaactgtattataaggtcacagcattaggatc 797
Query: 601 attaagataactgctgatttggagacaaccagtgagcatatagtatctacatcaaactac 660
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 attaagataactactgatttggagacaaccagtgagcatatagtatctacatcaaactac 857
Query: 661 atatgatggctatgaag 677
|||||||||||||||||
Sbjct: 858 atatgatggctatgaag 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1074
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1064
Effective search space: 709688
Effective search space used: 709688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
