Query= MSMg01no521_a05.b1 MSMg01no521_a05.b1 CHROMAT_FILE:
MSMg01no521_a05.b1 PHD_FILE: MSMg01no521_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:13 2005
(697 letters)
>mm_chr18_50941162_50942258
Length = 1097
Score = 1330 bits (688), Expect = 0.0
Identities = 691/692 (99%)
Strand = Plus / Plus
Query: 5 gaattctgggatatagccaggcatgggagcttcacctgggatgacatgaggagacagatg 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgggataaagccaggcatgggagcttcacctgggatgacatgaggagacagatg 264
Query: 65 tatggtacctgagcacaggtaaccattcatgtggcagaatgtatattaaaatgaataggt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatggtacctgagcacaggtaaccattcatgtggcagaatgtatattaaaatgaataggt 324
Query: 125 tatcttacattatgatataataaaagaaaagccaggctgtaaggctaaggtattgtaaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tatcttacattatgatataataaaagaaaagccaggctgtaaggctaaggtattgtaaat 384
Query: 185 atattttgagtctgaattttatttcttgtggcaaggaattgggagaaaaaaaacagtcag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atattttgagtctgaattttatttcttgtggcaaggaattgggagaaaaaaaacagtcag 444
Query: 245 cacttctacagacatttacctactgattgacacttgtcattggaaacagttctagacaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacttctacagacatttacctactgattgacacttgtcattggaaacagttctagacaat 504
Query: 305 ctaaggctttaattatgcataggtgctgattttttaaaatttgaaaatacatgattttta 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctaaggctttaattatgcataggtgctgattttttaaaatttgaaaatacatgattttta 564
Query: 365 aaataaaaatagaatttcaccaagctacatatttaacacacacagagacacatatgtgtg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaataaaaatagaatttcaccaagctacatatttaacacacacagagacacatatgtgtg 624
Query: 425 tgtgtgtgtgtgtgatatgtacatatgcgtgtgaatgtgtgtaacgtattgaccacaggc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtgtgtgtgtgtgatatgtacatatgcgtgtgaatgtgtgtaacgtattgaccacaggc 684
Query: 485 agccaagtaaatcaagcatgtgaaaaaacattgcatgaaattgtattagtgactgtaaac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agccaagtaaatcaagcatgtgaaaaaacattgcatgaaattgtattagtgactgtaaac 744
Query: 545 tactgcatctatcttatgaacctgtggaaatctgcagaagagatcatgaggatcctggcc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tactgcatctatcttatgaacctgtggaaatctgcagaagagatcatgaggatcctggcc 804
Query: 605 cttggaaatttgacagctgtgctctccatatctgccagaagcagtacacagtttgggaat 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cttggaaatttgacagctgtgctctccatatctgccagaagcagtacacagtttgggaat 864
Query: 665 tgcttattgttttcattcacttctatgagtgg 696
||||||||||||||||||||||||||||||||
Sbjct: 865 tgcttattgttttcattcacttctatgagtgg 896
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space: 746769
Effective search space used: 746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no521_a05.g1 MSMg01no521_a05.g1 CHROMAT_FILE:
MSMg01no521_a05.g1 PHD_FILE: MSMg01no521_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:54:13 2005
(657 letters)
>mm_chr18_51080285_51081345
Length = 1061
Score = 1212 bits (627), Expect = 0.0
Identities = 652/663 (98%), Gaps = 8/663 (1%)
Strand = Plus / Minus
Query: 1 tgaatgaactgggatttatcttgattttattttcttt-aaaaaaaatgataccctcattc 59
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 861 tgaatgaactgggatttatcttgattttattttctttaaaaaaaaatgataccctcattc 802
Query: 60 tgttctggctgatcaccacagtggatttagctttcatgtgccaccagctcatgattctgt 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 801 tgttctggctgatcaccacagtagatttagctttcatgtgccaccagctcatgattctgt 742
Query: 120 aacataataattttttttgtctttgttattatggccttgaccattcttcttttaaagtat 179
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacataat-attttttttgtctttgttattatggccttgaccattcttcttttaaagtat 683
Query: 180 tgaggatatataccatataaaattccaaatttagattttatagttataa-----attgat 234
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 682 tgaggatatataccatataaaattccaaatttagattttatagttataaattggattgat 623
Query: 235 gttatagattatggaaaggatatcaggagagaaaattcccattctcctgacatgcaatca 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gttatagattatggaaaggatatcaggagagaaaattcccattctcctgacatgcaatca 563
Query: 295 gggattcttgtcatcattatgatcaaaaattatattgccatttcttatcttggcaagcta 354
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 562 gggattcttgtcatcattatgataaaaaattatattgccatttcttatcttggcaagcta 503
Query: 355 ctgtttgctaagtgactgttttaccttgctcattacctgaacttttcatcaaagtaaatc 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 502 ctgtttgctaagtgactgttttaccttgctcattacctgaacttttcatcaaagcaaatc 443
Query: 415 actaaggcaagcctacacttgggaaacactattaaattaattcaggaagaggggggtatc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actaaggcaagcctacacttgggaaacactattaaattaattcaggaagaggggggtatc 383
Query: 475 cacaaatgatgaggctcagaacatacttatcttgtatttatttactttcctatgactcta 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cacaaatgatgaggctcagaacatacttatcttgtatttatttactttcctatgactcta 323
Query: 535 tgaaaccatatgtacacatgttgtagtataatttatcatacaatgctgaaaatatatatt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 322 tgaaaccatatgtacacatgttgtagtataatttatcatacaatgctgaaaatatat-tt 264
Query: 595 tttcaccatacctgagtcctccctttattatttctgtctgtgctttatgagtcatacatg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tttcaccatacctgagtcctccctttattatttctgtctgtgctttatgagtcatacatg 204
Query: 655 atc 657
|||
Sbjct: 203 atc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1061
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1051
Effective search space: 679997
Effective search space used: 679997
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
