Query= MSMg01no524_k01.b1 MSMg01no524_k01.b1 CHROMAT_FILE:
MSMg01no524_k01.b1 PHD_FILE: MSMg01no524_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:57 2005
(693 letters)
>mm_chr18_20270451_20271543
Length = 1093
Score = 1201 bits (621), Expect = 0.0
Identities = 666/683 (97%), Gaps = 7/683 (1%)
Strand = Plus / Minus
Query: 14 gaattctctgagctt---attcttacttaaggaaaaaaatatagtttatctgctttggag 70
||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||
Sbjct: 776 gaattctctgagcttaaaa--cttacttaagg-aaaaaatatagtttatctgctttggag 720
Query: 71 ttcttagataagttttaaaccaatagctgtgtcttaaatataataaaagttcagagagtt 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttcttagataagttttaaaccaatagctgtgtcttaaatataataaaagttcagagagtt 660
Query: 131 ctgtaagtttgtgtcacttagcacggtggtttgaaaatacttagattttgaaggtttttt 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 ctgtaagtttgtgtcacttagcacggtggtttgaaaatacttagattttgaaggtttttt 600
Query: 191 ccttttctaagacagtctgagaagtaatttactgacagtggagtggttctaagtgtcatt 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ccttttctaagacagtctgagaagtaatttactgacagtggagtggttctaagtgtcatt 540
Query: 251 tatatgagcttcaaaaatgcttctaatatttctcacttcttcaatagtaaactaaaatag 310
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 539 tatatgagcttcaaaaatgcttctaatatttctcacttcttcaatagtaaactcaaatag 480
Query: 311 cagtaataaaaagccttgagagctgctgtatccgtgcttatagaattccagaatccagta 370
||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 479 cagtaataaaaagactcgagagctgctgtatcattgcttatagaattccagaatccagta 420
Query: 371 cttttccaggctaaagatctgcgaggttttggagtattagaggcaatactctacaaattc 430
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 419 cttttccaggctaaagatctgtgaggttttagagtattagaggcaatactctacaaattc 360
Query: 431 aatggatcacactacattctattgcaattatgtaataatgatgtagtcctaagaactgtt 490
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aatggatcatactacattctattgcaattatgtaataatgatgtagtcctaagaactgtt 300
Query: 491 cacttacttatttcactgatactaaatgacttcccaaagccagttcctctatgcatatca 550
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 cacttacttatttcattgatactaaatgacttcccaaagccagttcctctatgcatatca 240
Query: 551 ctttctaaatgaatatgaaaaagtagataattaaaagttaattttaaaattaatagtaat 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctttctaaatgaatatgaaaaagtagataattaaaagttaattttaaaattaatagtaat 180
Query: 611 tttataaatcagacaaaaatcataacatgaaaaatgcgatcaaatatgatatttgttctt 670
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tttataaatcagac-aaaatcgtaacatgaaaaatgcgatcaaatatgatatttgttctt 121
Query: 671 ttttcttttttccttttttgagg 693
|||||||||||||||||||||||
Sbjct: 120 ttttcttttttccttttttgagg 98
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space: 739689
Effective search space used: 739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no524_k01.g1 MSMg01no524_k01.g1 CHROMAT_FILE:
MSMg01no524_k01.g1 PHD_FILE: MSMg01no524_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:58:57 2005
(565 letters)
>mm_chr18_20094802_20095766
Length = 965
Score = 1048 bits (542), Expect = 0.0
Identities = 560/566 (98%), Gaps = 1/566 (0%)
Strand = Plus / Plus
Query: 1 atgctgctttgcaaagacaaggaactggcttagttgcagtactctttctcactagaactt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atgctgctttgcaaagacaaggaactggcttagttgcagtactctttctcactagaactt 260
Query: 61 tgaaagagtgctatctgggaaataattcctcaaataggaagtaagaagacgacacaggag 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 tgaaagagtgctatctgggaaataattcctcaaataggaagtaagaagatgacacaggag 320
Query: 121 ctctcctaaattagcactacagtgtttcttttgattagataaacccacagtttcaacgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 ctctcctaaattagcactacagtgtttcttttgattagataaacccacagttttaacgtt 380
Query: 181 aaagtggcacaataaatatttaataagaaaagaacaatattttctgaaatgcaatatcaa 240
||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagtggcacaataaatgtttactaagaaaagaacaatattttctgaaatgcaatatcaa 440
Query: 241 aggctgtaagggatgagtaactaaacctaatagtgctggatcatagccaaatgtggtagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggctgtaagggatgagtaactaaacctaatagtgctggatcatagccaaatgtggtagc 500
Query: 301 acacacctttaatcccagcatttgggaggcagaggcattagtatctccatgagctcaaga 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcacctttaatcccagcatttgggaggcagaggcattagtatctccatgagctcaaga 560
Query: 361 tcagcctgacttacatagttagttctaggacagggaaagccagccagtgctaaatagtga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagcctgacttacatagttagttctaggacagggaaagccagccagtgctaaatagtga 620
Query: 421 aagcctttctttaaaaaaaaaaaa-gaaagaaagaaaagaaaaaagaaaggcaaaaagaa 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 aagcctttctttaaaaaaaaaaaaagaaagaaagaaaagaaaaaagaaaggcaaaaagaa 680
Query: 480 aaggaggaagaaaggaaggaagggaggaaggaaggaaagtaagaaggaagggtgagtgtg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggaggaagaaaggaaggaagggaggaaggaaggaaagtaagaaggaagggtgagtgtg 740
Query: 540 ggaccttaattttcttctatgatatt 565
||||||||||||||||||||||||||
Sbjct: 741 ggaccttaattttcttctatgatatt 766
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
