Query= MSMg01no526_e24.b1 MSMg01no526_e24.b1 CHROMAT_FILE:
MSMg01no526_e24.b1 PHD_FILE: MSMg01no526_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:12 2005
(656 letters)
>mm_chr18_63802130_63803185
Length = 1056
Score = 1174 bits (607), Expect = 0.0
Identities = 649/677 (95%), Gaps = 24/677 (3%)
Strand = Plus / Minus
Query: 4 ggaattcacaacattgctctaaccccaaaccatgtaaatctgctccaggggccatggtct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 ggaattcacaacattgctctaaccccaaaccatgtaaatctgctccaggggccatggtct 981
Query: 64 cgtaga--------gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaag 115
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 cgtagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaag 921
Query: 116 ggacgagagaagaggtcctgtggccaggctgtgtgatctcccgaagtgttggtgatctat 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 ggacgagagaagaggtcctgtggccaggctgtgtgatctcccgaagtgttggtgatctat 861
Query: 176 gtgggtgcaggccaggagcagggtaaggatggagttggccatcatttaataagtagctta 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 gtgggtgcaggccaggagcagggtaaggatggagttggccatcatttaataagtagctta 801
Query: 236 cttagaatcaagaagaagttcagaggtgaggcttctcatccttttagactttgag----- 290
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 cttagaatcaagaagaagttcagaggtgaggcttctcatccttttagactttgagcagct 741
Query: 291 -tggctctgtc----------tctgtctgtctgtctgtctgtctgtctgtctctgtgtgc 339
|| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctgtctctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctctgtgtgc 681
Query: 340 gtgtgtgcacatgtgtgcatgcacatgtgtgtattgtgttacagtgaatggacatggctt 399
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 680 gtgtgtgcacatgtgtgcatgcacatgtgtgtattatgttacagtgaatggacatggcct 621
Query: 400 gtgcttttgaatggaatgcaaattaagaaataaataaaaattgaattgccgtatgatctc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtgcttttgaatggaatgcaaattaagaaataaataaaaattgaattgccgtatgatctc 561
Query: 460 atttttggtactgaagttctagcatcagtaaacatttcctggggagacacaaacacctct 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atttttggtactgaagttctagcatcagtaaacatttcctggggagacacaaacacctct 501
Query: 520 ttactacagtaggataccaatgacagaccaaagaaataattccacccaggtctagattga 579
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 500 ttactacagtaggataccaatgacagaccaaagaaataattccacccaagtctagattga 441
Query: 580 ttaaccaatgagtttcactggggttgcttacaggagcatggacaatgtacaggctgttac 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttaaccaatgagtttcactggggttgcttacaggagcatggacaatgtacaggctgttac 381
Query: 640 accataggagtttcttg 656
|||||||||||||||||
Sbjct: 380 accataggagtttcttg 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 100
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no526_e24.g1 MSMg01no526_e24.g1 CHROMAT_FILE:
MSMg01no526_e24.g1 PHD_FILE: MSMg01no526_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:12 2005
(631 letters)
>mm_chr18_63658098_63659128
Length = 1031
Score = 1172 bits (606), Expect = 0.0
Identities = 624/630 (99%)
Strand = Plus / Plus
Query: 1 ttgagagactaacaacacgcgtgtatgataatcaattttgagacactacaaagaaccagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgagagactaacaacacgcgtgtatgataatcaattttgagacactacaaagaaccagg 260
Query: 61 aagagcctcagtgtagctcagtgacagaacacacgcttggcatgcagcatgcccctggtt 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagagcctcactgtagctcagtgacagaacacacgcttggcatgcagcatgcccctggtt 320
Query: 121 gatgttccagaaacaacagcagttcaggagaagatcaaggatttcgtagagtcaactgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatgttccagaaacaacagcagttcaggagaagatcaaggatttcgtagagtcaactgtc 380
Query: 181 ctcactagtaagctttctaatgccgttttcagattttgtagataaaataaataaggccag 240
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcactagtaagctttataatgccgttttcagattttgtagataaaataaataaggccag 440
Query: 241 gtgtgtactacacagcaagtaagcaaaggcctgtgaatctagctcaacgaactcacttta 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 gtgtgtactacacagcaagtaagcaaaggcctatgaatctagctcaacgaactcacttta 500
Query: 301 cagaccagttcatttaactttcattgtcaaagcatatccttcaacaataaattttatcct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagaccagttcatttaactttcattgtcaaagcatatccttcaacaataaattttatcct 560
Query: 361 tcctattaaaataaattcaatagacaattggctcacatctgcaccatgaagcttgtgtgt 420
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 561 tcctattaaaataaattcaatagacatttggctcacatctgcaccatgaaacttgtgtgt 620
Query: 421 aattgcgaagcttaatttcaaagtagtttgctgggcttagagacagggaagcaagtgatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aattgcgaagcttaatttcaaagtagtttgctgggcttagagacagggaagcaagtgatg 680
Query: 481 atagcgaagtggctacacaaagatggtgggtcctaagaaactaacaagagggaatgggag 540
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atagagaagtggctacacaaagatggtgggtcctaagaaactaacaagagggaatgggag 740
Query: 541 ctgttagctaagctaaggaagaaacagttgaaaaccaagtaagaagtagagagctgagga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgttagctaagctaaggaagaaacagttgaaaaccaagtaagaagtagagagctgagga 800
Query: 601 tggagagaagcggatcactgcctatgggtg 630
||||||||||||||||||||||||||||||
Sbjct: 801 tggagagaagcggatcactgcctatgggtg 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
