BAC Information

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BAC

Clone NameMSMg01-526M13
Chromosome18 (Build37)
Map Location 52,152,997 - 52,281,366
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042385, Prr16, EG240289
Downstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-526M13.T7 (MSMg01no526_m13.b1)MSMg01-526M13.TJ (MSMg01no526_m13.g1)
ACCAG596293AG596294
length752724
length of high quality
(start - end)		345 (38 - 382)650 (66 - 715)
definitionCHROMAT_FILE: MSMg01no526_m13.b1 PHD_FILE: MSMg01no526_m13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:49 2005CHROMAT_FILE: MSMg01no526_m13.g1 PHD_FILE: MSMg01no526_m13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:01:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,281,251 - 52,281,366)(52,152,997 - 52,153,643)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGC
ATCTTTGCTAATTTTTTGGCTGTCAGCGAACTAGGCAAAAAAGTGGCATG
TGTAGGGACATCTTTTCATAAAAGGTCAAAGAACGCATTGTCTGAATGTG
AGAGTGTGGTCAGAGGTCTGAGAATGTCCTGAACAATAAAGAAAAAGTTA
AGAGAGAAAAACACTTGGCATATGAAAGACGAAAATATCACAAGGGAGCA
GGGTAGCAGCAACAACTCTTGTAAGTTGAAGGGGTCATGAAAGACAGGTA
CTAAAACTCCTCTGATTCTGATAGTAGGACACTGATGAACTGGGGGTGAA
AAGAGGAAGTGCCATGGAAGCCTGACATCATCTAAGTTAAGACATATGTG
TTGTAGTTTACGTGATACTTTCAGAAGAATTGTGTCATCCATATGCAATG
TGTCTGGGTTTGGTGGCTGATTATGAGATGGATTCCCGGGTGGGGTATGA
AGGGACCCTGTTATACCTGTCTCATATGAGGCTATGCCAGTGCCTGGTTA
ATACAGAATTGGATGCTCACAGTCTTCTTTTATATGGAACGCATGGTCCC
CCTTTGGAAAAGCTTAGAGAAGCTACTCTTTGAAGCTGAAAGGGGTCTTG
CTACCCCTATTGGTGGGAACTACCTATGGCGGATTTATTTTCGTAGCCCT
CCTGTACTTTCTTTTTCTTCTTAGTCTTTTATATGTTTATCAATCTAATT
AG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGGAAAACAATCTCTCCAATAGTCTTCTTTTTAAA
TGGGGTTTTGTTAACTATCCAGGTCTTTTTTTATTCCATATGAGTTTTAG
ATATTTTTTTCTATTTCTTTGAAGTGATATAATTCTATTTAAAATAAAAT
TATATTTAAATATAAGGATAAAAAATTAAAATGCAGTAAATTATAAAACC
ACATACTTTTTTTGGTGGGGGGGTTCTTTCGAGACAGGTTTTCTCTGTGT
AGCCCTGGCTGTCATGGAACTCACTCTGTAGACCAGGCTGGTCTCAAACT
CAGAAATCTGCCTACCTCTGCCTCCCAAGTGCTGGGATTAAAGGCATACA
CCACTACTTTATTGAACTTAATAGGGATTTTGTGATTTTTCAAGCTTGTC
CACTGCTTTGAAGATTAGATTAAATATTAATTCATGGCTGAAGAAGGAGT
ATTGATTATCATTGGAACTGAAATGTTAAATCTGAGATATATAACTATTG
CCATGACAAATGAGGCACAAACAAAATGAGACACTATTGAGATAGAAGAT
TGTCAAAGCTCTCATTTTGCCAGGGATGTTGTGGTTGAAGAACCCAGTAA
GTGATATCTCACAAGAACATTGAAACATTTGAGTGGAACTCTTACTGTCT
CAGGACACTCATCTACAGAACTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no526_m13.b1 MSMg01no526_m13.b1 CHROMAT_FILE:
MSMg01no526_m13.b1 PHD_FILE: MSMg01no526_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:49 2005
         (345 letters)



>mm_chr18_52281047_52281791
          Length = 745

 Score =  186 bits (96), Expect = 2e-51
 Identities = 111/116 (95%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagcatctttgctaattttttggctgtcagcgaactaggcaaaaaagtggcatgt 64
           ||||||||||||  || ||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 320 gaattcagcatcagtgttaattttttggctgtcagcaaactaggcaaaaaagtgtcatgt 261

                                                                   
Query: 65  gtagggacatcttttcataaaaggtcaaagaacgcattgtctgaatgtgagagtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtagggacatcttttcataaaaggtcaaagaacgcattgtctgaatgtgagagtgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no526_m13.g1 MSMg01no526_m13.g1 CHROMAT_FILE:
MSMg01no526_m13.g1 PHD_FILE: MSMg01no526_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:01:49 2005
         (650 letters)



>mm_chr18_52152794_52153843
          Length = 1050

 Score = 1220 bits (631), Expect = 0.0
 Identities = 643/647 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   aaaacaatctctccaatagtcttctttttaaatggggttttgttaactatccaggtcttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaaacaatctctccaatagtcttctttttaaatggggttttgttaactatccaggtcttt 263

                                                                       
Query: 64  ttttattccatatgagttttagatatttttttctatttctttgaagtgatataattctat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 264 ttttattccatatgagttttagatatttttttctatttctttgaagtgatataattctag 323

                                                                       
Query: 124 ttaaaataaaattatatttaaatataaggataaaaaattaaaatgcagtaaattataaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaaaataaaattatatttaaatataaggataaaaaattaaaatgcagtaaattataaaa 383

                                                                       
Query: 184 ccacatactttttttggtgggggggttctttcgagacaggttttctctgtgtagccctgg 243
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 384 ccacatactttttttggtgggggggttctttcgagacagggtttctctgtgtagccctgg 443

                                                                       
Query: 244 ctgtcatggaactcactctgtagaccaggctggtctcaaactcagaaatctgcctacctc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtcatggaactcactctgtagaccaggctggtctcaaactcagaaatctgcctacctc 503

                                                                       
Query: 304 tgcctcccaagtgctgggattaaaggcatacaccactactttattgaacttaatagggat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcctcccaagtgctgggattaaaggcatacaccactactttattgaacttaatagggat 563

                                                                       
Query: 364 tttgtgatttttcaagcttgtccactgctttgaagattagattaaatattaattcatggc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttgtgatttttcaagcttgtccactgctttgaagattagattaaatattaattcatggc 623

                                                                       
Query: 424 tgaagaaggagtattgattatcattggaactgaaatgttaaatctgagatatataactat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tgaagaaggagtattgattatcattggaactgaaatgttaaatctgagatatataactat 683

                                                                       
Query: 484 tgccatgacaaatgaggcacaaacaaaatgagacactattgagatagaagattgtcaaag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgccatgacaaatgaggcacaaacaaaatgagacactattgagatagaagattgtcaaag 743

                                                                       
Query: 544 ctctcattttgccagggatgttgtggttgaagaacccagtaagtgatatctcacaagaac 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctctcattttgccagggatgttgtggttgaagaacccagtaagtgatatctcacaagaac 803

                                                          
Query: 604 attgaaacatttgagtggaactcttactgtctcaggacactcatcta 650
           |||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 804 attggaacatttgagtggaactcttactgtctcaggacactcctcta 850


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space:   665600
Effective search space used:   665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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