Query= MSMg01no527_l05.b1 MSMg01no527_l05.b1 CHROMAT_FILE:
MSMg01no527_l05.b1 PHD_FILE: MSMg01no527_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:02 2005
(685 letters)
>mm_chr18_88071658_88072742
Length = 1085
Score = 1174 bits (607), Expect = 0.0
Identities = 668/715 (93%), Gaps = 42/715 (5%)
Strand = Plus / Plus
Query: 5 gaattccatgaatttttaaaatgatgtattttctatgatttggcaatagttatactcatg 64
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattccatgaagttttaaaaagatgtattttctatgatttggcaatagttatactcacg 264
Query: 65 gtgatactgtaaagtagaagacataaataacacaaacaaatattctagttgtccttttag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtgatactgtaaagtagaagacataaataacacaaacaaatattctagttgtccttttag 324
Query: 125 gtggaccaaatagaaattatttcaatgtaagtaattgagaaattgagaactcttgtgtac 184
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 gtggaccaaatagaaattatttcaatgtaagt--------aattgagaactcttgtgtac 376
Query: 185 aaattgatactcctggagaaatgtagtcaataataaatttcttctaactgagaatccttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaattgatactcctggagaaatgtagtcaataataaatttcttctaactgagaatccttg 436
Query: 245 agaactccaattttcctaaatgcttctcttaatagttgaaataatagctaactaactttt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agaactccaattttcctaaatgcttctcttaatagttgaaataatagctaactaactttt 496
Query: 305 gatggcctgaaagcaaggccattctagaatagtacatatagaacatattttagtgagtaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gatggcctgaaagcaaggccattctagaatagtacatatagaacatattttagtgagtaa 556
Query: 365 ttaatagaaatatcaggaaagaatgagatgaaaatcaaacaacccacaggtgaatataat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ttaatagaaatatcaggaaagaatgagatgaaaatcaaacaacccacaggtgaatataat 616
Query: 425 gaatataaatgtcattattgtacctggatttatagagttacataggtaacatctatacct 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 gaatataaatgtcattattgtacctggatttatagagttacataggtaacatctatacct 676
Query: 485 atagctttcacataccacaatacattttgagaattatgtgtataaaacatctaccatgga 544
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 atagcttttacataccacaatacattttgagaattatgtgtataaaacatctaccatgga 736
Query: 545 ttactacacacatgcacacacacacagatatacataggcatgcagacatagacagacaga 604
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 737 ttactacacacatgcacacacacacagatacacataggcatgcagacatagacagacaga 796
Query: 605 cagacacacaca----------------------------------cacacacacacaca 630
|||||||||||| ||||||||||||||
Sbjct: 797 cagacacacacatacacacacacacacacacacacacacacacacacacacacacacaca 856
Query: 631 cagaggtgggggggattgcaactcatttttaaataattaactggacctagggaat 685
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 cagaggtgggggggattgcaactcatttttaaataattaactggacctagggaat 911
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 58
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no527_l05.g1 MSMg01no527_l05.g1 CHROMAT_FILE:
MSMg01no527_l05.g1 PHD_FILE: MSMg01no527_l05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:03:02 2005
(666 letters)
>mm_chr18_88235140_88236205
Length = 1066
Score = 1180 bits (610), Expect = 0.0
Identities = 651/665 (97%), Gaps = 2/665 (0%)
Strand = Plus / Minus
Query: 1 catggaggcttgtgtgctgctacaaagcatcttcattgaaaaccttagctgatgaaccta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1057 catggaggcttgtgtgctgctacaaagcatcttcattgaaaaccttagctgatgaaccta 998
Query: 61 catctagcctgtttatcaaactgagttgaaggtctcttcccaccatcttcttgttctttt 120
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 997 cctctagcctgtttatcaaactgagttgaaggtctctccccaccatcttcttgttctttt 938
Query: 121 ctcagtaccacatggttcaaaagtgactttactttattttttcatttttctttcttcttc 180
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 937 ctcagtaccacatggttcaaaagtgacttttctttcttttttcatttttctttcttcttc 878
Query: 181 ttcttattttttttgcagttaatatgttatcttgtctgctcttctcctttgattaacagt 240
|| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 877 tt-tt-ttttttttgcagttaatatgttatcttgtctgctgttctcctttgattaacagt 820
Query: 241 gcttgactattggttggagttaaaaggcccagcagagagaaaaaggtgtgggatgtccat 300
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 819 acttgactattggttggagttaaatggcccagcagagagaaaaaggtgtggggtgtccat 760
Query: 301 caacactgttggcagaagggacttagttgcaaaaatcctgatttccaaccttaaccttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 caacactgttggcagaagggacttagttgcaaaaatcctgatttccaaccttaaccttca 700
Query: 361 tcctgctctaactcccttactttcttaggaattgtttcctaatgttaaatgtgtcctgaa 420
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct: 699 tcctgctctaactcccttacttttttagaaattgtttcctaatgttaaatgtgtcctgaa 640
Query: 421 gaatgaacgcagattcatgtctaacattgctgtaagccatccagtggaacacagaaaaaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gaatgaacgcagattcatgtctaacattgctgtaagccatccagtggaacacagaaaaaa 580
Query: 481 aaatacagagtgtacagaggtataaatgtggggccaggggaggaaattcaatgctgaaaa 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aaatacagaatgtacagaggtataaatgtggggccaggggaggaaattcaatgctgaaaa 520
Query: 541 ttctttgaagactgcctaaagaggaggtcaatatataaagaanatgccaaaccttttcat 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 519 ttctttgaagactgcctaaagaggaggtcaatatataaagaaaatgccaaaccttttcat 460
Query: 601 ttttatgtaatcccatatacacattttggggatttttttctctattacttattagagata 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ttttatgtaatcccatatacacattttggggatttttttctctattacttattagagata 400
Query: 661 tcaaa 665
|||||
Sbjct: 399 tcaaa 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 666
Length of database: 1066
Length adjustment: 10
Effective length of query: 656
Effective length of database: 1056
Effective search space: 692736
Effective search space used: 692736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
