BAC Information

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BAC

Clone NameMSMg01-530K06
Chromosome18 (Build37)
Map Location 31,490,781 - 31,491,507
singlet/doubletsinglet
Overlap genenone
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168, Rit2
Downstream geneEG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530K06.T7 (MSMg01no530_k06.b1)MSMg01-530K06.TJ (MSMg01no530_k06.g1)
ACCAG599230AG599231
length767779
length of high quality
(start - end)		719 (45 - 763)667 (76 - 742)
definitionCHROMAT_FILE: MSMg01no530_k06.b1 PHD_FILE: MSMg01no530_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:02 2005CHROMAT_FILE: MSMg01no530_k06.g1 PHD_FILE: MSMg01no530_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACATAACATATGCATGTGTGTGAGTGTGTGTGTGGTGTATGTATG
AGTGTTTTGTTGTTTTAGGTGTTAATTGGCCTTGTAACTAATGTAATTGC
AGTTCTAGTTTTTGCACACTCTGGTTAGGATGTGGGGAAAACCTTGTTTT
CATTTTTTCCAAGAATCATGTCAAGCTTTTGCCTTTTCACACTAATTTCT
TTGTGCAATACTGACAAGCTACGGAAGTCAGCTGAGAAAAGCAAAACAAA
CAGAACCAAAAAAAAAAAAGCCCCAGAATTTCAACAAAATATACACCAGG
ATTAGAGGATGAGACATGCAAGGTAAAAATAAAAAGAGTTCAAATTTATA
TGGTCTTCAAAAGAGAGGTCTCTAAGATAGGCTTTCCATGACACAATCCA
TAAATATCATCAAGGTAACAAAATAAACAAAGCAAATCATTTACAGTGAC
AAAAAAAGCAAGCAGTAGGACAGGAATGATTGTTTGAAGCTAAGTGATGG
AAAACTTTACAGTGGAATAAAAGAAAGAAAGCAAACAGCTCGGGGTGGGG
TGAGGGTAGGGTCCCAAGGCCTGACACTATTACTGAGGTTATGGAGCACT
CACAAAAGGGACCTATCATGATTGCCCTCTGGAAGACCCAACAAGCAGCT
GAAAAGAGTCAGATGCAGATATTTGCACCCAACCAGTGGACAGAAGCAGC
TGACCCCTGTGGTTGAA

GCATGACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAAAAACCTATATAGTTAAGAGGC
ACTAAAGCTCCCCCCCCCCCCTGCGGCAAAGCTTTATTGCTTACTCAGGA
GCAAGAGAGGAAGAGCGCGGCAGAGAGAGGCAGAGAGGAAGAGAGAGAGA
GACGCAGAGAGACGCAGAGAGAGAGGCAGAGAGAGGGGCAGAGAGGGAGA
GAGGCAGAGAGCAGAGGAAGAGAGCAGAGGAAAAGACGAAGAGAAAGAGA
CGAAGAGACGAAGAGAAGAGAGCAGAGGAAAAGACGAAGAGAAAGAGACG
AAGAGACGAAGAGAGCGGCACTAAAGCTTTTAAGAGATCTTGGATTTTAA
GTGTTTAAAAATGTAAAGACAATTGGTCTATGCTTTATTTTGTGAGATTA
ACATGAGATCTTGAGCACACTAATGAAAAGGATACGATTTAATGTGATGT
TTTTGTGTGTCAAAGTTGACGAGGGTACAATTTCATAGTTTTCATCAAAT
GTCACAAGCCTGGACATACATAGGAAGAGGAGATCTTCCCTGCAGAACTG
CCTCAATCAGATTCTACCAGATGCATGCATCACTGTGAGGCATTTTCTTG
TTTACTAATTGAGGTGAGAGGTACAGACCAGTGTGTGCAGTGTCACGTAG
GCAGGTTAACTTTGGCTATGTAAGAAAAGGAGCTGATCTACCTGATGGTT
AACCAGAAGCTTCCTGCCTCCCTATTCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_k06.b1 MSMg01no530_k06.b1 CHROMAT_FILE:
MSMg01no530_k06.b1 PHD_FILE: MSMg01no530_k06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:02 2005
         (719 letters)



>mm_chr18_31490480_31491598
          Length = 1119

 Score = 1268 bits (656), Expect = 0.0
 Identities = 705/728 (96%), Gaps = 14/728 (1%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcaacataacatatgcatgtgtgtgagtgtgtgtgtggtgtatgtatgagtgtttt 64
            ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1028 gaattcaacataacagatgcatgtgtgtgagtgtgtgtttggtgtatgtatgagtgtttt 969

                                                                        
Query: 65   gttgttttaggtgttaattggccttgtaactaatgtaattgcagttctagtttttgcaca 124
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 968  gttgttttaggtgttaattggccttgtcactaatgtaattgcagttctagtttgtgcaca 909

                                                                        
Query: 125  ctctggttaggatgtggggaaaaccttgttttcattttttccaagaatcatgtcaagctt 184
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 908  ctctggttaggatgtggggaaaaccttgttctcattttttccaagaatcatgtcaagctt 849

                                                                        
Query: 185  ttgccttttcacactaatttctttgtgcaatactgacaagctacggaagtcagctgagaa 244
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 848  ttgccttttcacactaatttctttgtgcaatactgacaagttacggaagtcagctgagaa 789

                                                                        
Query: 245  aagcaaaacaaacagaacc-----------aaaaaaaaaaaagccccagaatttcaacaa 293
            |||||||||||||||||||           ||||||||||||||||||||||||||||||
Sbjct: 788  aagcaaaacaaacagaaccaaaaaaaaaaaaaaaaaaaaaaagccccagaatttcaacaa 729

                                                                        
Query: 294  aatatacaccaggattagaggatgagacatgcaaggtaaaaataaaaagagttcaaattt 353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728  aatatacaccaggattagaggatgagacatgcaaggtaaaaataaaaagagttcaaattt 669

                                                                        
Query: 354  atatggtcttcaaaagagaggtctctaagataggctttcca-tgacacaatccataaata 412
            |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 668  atatggtcttcaaaagagaggtctctaagataggcttt-cattgacacaatccataaata 610

                                                                        
Query: 413  tcatcaaggtaacaaaataaacaaagcaaatcatttacagtgacaaaaaaagcaagcagt 472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609  tcatcaaggtaacaaaataaacaaagcaaatcatttacagtgacaaaaaaagcaagcagt 550

                                                                        
Query: 473  aggacaggaatgattgtttgaagctaagtgatggaaaactttacagtggaataaaagaaa 532
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 549  aggacaggaatgattgtttgaagctaagtgatggaaaactttacagtggaataaaaaaaa 490

                                                                        
Query: 533  gaaagcaaacagctcggggtggggtgagggtagggtcccaaggcctgacactattactga 592
            ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489  gaaaggaaacagctcagggtggggtgagggtagggtcccaaggcctgacactattactga 430

                                                                        
Query: 593  ggttatggagcactcacaaaa-gggacctatcatgattgccctctggaagacccaacaag 651
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 429  ggttatggagcactcacaaaaggggacctatcatgattgccctctggaagacccaacaag 370

                                                                        
Query: 652  cagctgaaaagagtcagatgcagatatttgcacccaaccagtggacagaagcagctgacc 711
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369  cagctgaaaagagtcagatgcagatatttgcacccaaccagtggacagaagcagctgacc 310

                    
Query: 712  cctgtggt 719
            ||||||||
Sbjct: 309  cctgtggt 302


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space:   786281
Effective search space used:   786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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