BAC Information

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BAC

Clone NameMSMg01-530K08
Chromosome18 (Build37)
Map Location 84,540,918 - 84,541,608
singlet/doubletsinglet
Overlap geneZfp407
Upstream geneLOC665284, Tshz1, Zadh2, LOC669856
Downstream geneCndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530K08.T7 (MSMg01no530_k08.b1)MSMg01-530K08.TJ (MSMg01no530_k08.g1)
ACCAG599234AG599235
length782769
length of high quality
(start - end)
89 (79 - 167)691 (79 - 769)
definitionCHROMAT_FILE: MSMg01no530_k08.b1 PHD_FILE: MSMg01no530_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:02 2005CHROMAT_FILE: MSMg01no530_k08.g1 PHD_FILE: MSMg01no530_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAACAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGCG
GAATTCCTCCCCTAGTTCCTGACTCCTTCCCTTTGCCTTTGGGTCTCTTT
TCTTTCCATTCCTCTGTTGTCTATCTTCATCCATCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCGATGCAAGAGAGATCCCTCAATCACAAAGAAA
GAGGGAAAGAGAGAGGGTGAAAGGGAGGGAGTAAACGGGGAGAGGGAAGG
AGAAAAGAAGGGAAAGGAGATAGAAAGAGAGAGCGGAGAAAAGAAAGAGA
GAAAGAGAGAGGGAGGGGGGAAGAAGAGTAGAAAGGAAGGAAAGAAAGGG
GAGAAGAGAGAAAGAGTGACAAGAAGAAGAACAAGGAGGGGGGAGGAAGG
AAGAGGAGAGAAGAAAAGGGAGAGAAGAGAAGTGGAAAGGAAAGAAAAAA
GGAAGAAGAAGGAAAGAAGAAGGGAAGGGGAGGAAAAAAGGGAAGGAAGG
GGAAGGGATAAAAGAGAAGGAGGAAGAGGGGAGAAAGAGAGAAAAAGAAA
AAAAGAAAAGAGGGGACGGAGCGGAAAGGAGAAGAAGAGAAGGAAAAGGA
AGGGAGGGAGGAGAGAGGAAAGGGAAAGAGGAGGAGAGGGGAGGAAAGAG
GGGGAGGGAAAGGAAGAGAAAGGGAAGGGAAAAATGAACGTGAAGAGGAA
AAGGGAGAGAGGGGGAGGAGAATGAAAGATTTAGCGAGCGAGGGAATAAA
AAAGAGAGTGATAGAAGAGAAAGGGAGAAGGA
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAAATTTGAACAAAACATGG
ATGTTTAACCAAAATTTTTCATTATGTCTATTATTTGCAAGCAAACAAAG
GAAGCAGGAAGTGGAGAAAAGGAAGGCAGAACAACTAGTTAACAAGATAA
TAGCAATGAAATTAATGGCTCTCCACTGCGGGTTCATGACATGGCTTTGC
CATCTACATAGAAAATGAAGAGACACAAACAAACAAACCACAGAAAGTAA
CTCAAATGGTTATCAAACACAAATCCAGATGAGGAATTTTAAATGTATTT
TATTTCTCTTTAAACAAATGGTAACTGTCTGACTCCATCCCAGGATATGT
TATCCATCTGCCATTCTAAAACTGAAAGTAACAGAAGAGCCTCTTATGAG
CCATGGATTTCCCTAAAGGCCAACCCAAGGCCTGGCCCCTAACAGGTACC
AGGTGGAGGGAGGCACTGCTGTAGATACTCTTTCTTACTTTAGGTGGAAG
AGAAAGTTTGAGTGCACTTAACACTCACAGGTACACAGCAGCTCAAGAAC
CACTCAGGTCCACAGTTGTGATTTTTCTCCTGAAATTAGCAGATAGAAAC
AAATTATTCACAAATTACATTAATCGATGCTGCTCTAGTCATCTGAAACA
TGTCCAGTATTAGCATCTGATATGCCTACAGATAGTCGTTGCTACGGGTG
CACATGAAGCACTGTAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_k08.g1 MSMg01no530_k08.g1 CHROMAT_FILE:
MSMg01no530_k08.g1 PHD_FILE: MSMg01no530_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:02 2005
         (691 letters)



>mm_chr18_84540718_84541808
          Length = 1091

 Score = 1290 bits (667), Expect = 0.0
 Identities = 685/691 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttaaatttgaacaaaacatggatgtttaaccaaaatttttcattatgtctattatttgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttaaatttgaacaaaacatggatgtttaaccaaaatttttcattatgtctattatttgc 260

                                                                       
Query: 61  aagcaaacaaaggaagcaggaagtggagaaaaggaaggcagaacaactagttaacaagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagcaaacaaaggaagcaggaagtggagaaaaggaaggcagaacaactagttaacaagat 320

                                                                       
Query: 121 aatagcaatgaaattaatggctctccactgcgggttcatgacatggctttgccatctaca 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatagcaatgaaattaatgggtctccactgcgggttcatgacatggctttgccatctaca 380

                                                                       
Query: 181 tagaaaatgaagagacacaaacaaacaaaccacagaaagtaactcaaatggttatcaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaaaatgaagagacacaaacaaacaaaccacagaaagtaactcaaatggttatcaaac 440

                                                                       
Query: 241 acaaatccagatgaggaattttaaatgtattttatttctctttaaacaaatggtaactgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaatccagatgaggaattttaaatgtattttatttctctttaaacaaatggtaactgt 500

                                                                       
Query: 301 ctgactccatcccaggatatgttatccatctgccattctaaaactgaaagtaacagaaga 360
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 501 ctgactccatcccaggatatgttatccatctgccattccaaaactgaaagtagcagaaga 560

                                                                       
Query: 361 gcctcttatgagccatggatttccctaaaggccaacccaaggcctggcccctaacaggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcctcttatgagccatggatttccctaaaggccaacccaaggcctggcccctaacaggta 620

                                                                       
Query: 421 ccaggtggagggaggcactgctgtagatactctttcttactttaggtggaagagaaagtt 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaggtcgagggaggcactgctgtagatactctttcttactttaggtggaagagaaagtt 680

                                                                       
Query: 481 tgagtgcacttaacactcacaggtacacagcagctcaagaaccactcaggtccacagttg 540
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 681 tgagtgcacttaacactcacagctacacagcagctcaagaaccgctcaggtccacagttg 740

                                                                       
Query: 541 tgatttttctcctgaaattagcagatagaaacaaattattcacaaattacattaatcgat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgatttttctcctgaaattagcagatagaaacaaattattcacaaattacattaatcgat 800

                                                                       
Query: 601 gctgctctagtcatctgaaacatgtccagtattagcatctgatatgcctacagatagtcg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gctgctctagtcatctgaaacatgtccagtattagcatctgatatgcctacagatagtcg 860

                                          
Query: 661 ttgctacgggtgcacatgaagcactgtaatt 691
           |||||||||||||||||||||||||||||||
Sbjct: 861 ttgctacgggtgcacatgaagcactgtaatt 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)