BAC Information

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BAC

Clone NameMSMg01-530N08
Chromosome18 (Build37)
Map Location 90,024,165 - 90,024,520
singlet/doubletsinglet
Overlap genenone
Upstream geneSocs6, Rttn, Cd226, Dok6
Downstream geneLOC383320, LOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-530N08.T7 (MSMg01no530_n08.b1)MSMg01-530N08.TJ (MSMg01no530_n08.g1)
ACCAG599378AG599379
length776758
length of high quality
(start - end)		668 (47 - 714)638 (79 - 716)
definitionCHROMAT_FILE: MSMg01no530_n08.b1 PHD_FILE: MSMg01no530_n08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:17 2005CHROMAT_FILE: MSMg01no530_n08.g1 PHD_FILE: MSMg01no530_n08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:07:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTGCTATTTCTCAGACTTTTATCATGAATGGGTGTTGGATTTTG
TCAAATGCTTTCTCAGCATCTAACGAGATGATCATGTGGTTTTTGTCTTG
GAGTTTGTTTATACAGTGGATTACATTGATGGATTTCCGTATATTAAACC
ATCCCTGCATCCCTGGGATGAAGCCTGGGATGATGGATGATCGTTTCGAT
GTATTCTTGGATTCAGTTTGCGAGGATTTTATTGAGTAATTTTGCATCAA
TATTCATAAGGGAAATTGGTCTGAAGTTCTCTTTCTTTGTTGGGTCTTTG
TGTGGTTTAAGTATCAGAGTAATTGTGGCTTCATAGAATGAATTGGGTAG
AGTACCTTCTGTTTCTATTTTGTGAAATAGTTTGAGATGAAATGGAATTA
GGTCTTCTTTGAAAGTCTGATGGAACTCTACAGATTGGTTAATCTGATCC
TGGGCTTTTTTTGGTTGGGAGACTATTAATGACTGTTTCAATTTCTTTAA
GGGATATGGGACTGTTTGAATTGTTAATCTGATCCTGATTTTATTTTGGT
ACCTAGTATCTGTCTATAAAATTGTTCATTTCGTTCAGGTTTTCCAATTG
TGTTGAGTATATAGTCTATATATATATATATATATATATATATATATATA
TATATATATATAAAATTAGGTATTTTCCTCATTTACATTTCCAATGCTAT
CCCAAAATGCTCCCATACCCTCCCCC

NNNACAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGAATGTTTCTCCCATATATA
TAAAACTTTCTACATTGCCAACAATCACTATATTTGGTTTAATTAATACA
ACCTTATACTAAATGGAATTCTATGTTAAGGACATACTTGGCTACATACA
TTTTATATATTTGACATTTTATTATATATCCACCATTATAATATTACATA
AAAAATTTATAACCCAAATATATTTCCATATACCTCAAAACCTTTCTGTC
AGGAGCCATAGTAGGACAAGATAAATAATAGCAGGTGATCTTCTTGAGAT
GGTCTGCTTTGGATTATAAATCCACAACAGATTTTCTCTCATAATCCAGG
TCCAAAAGAATTCACTTTAGGAAACATTCCTGCTATTAATATGCTTTCCT
GCTATTATTAAACATATGTAACAATCACTATTTATTAACCAACCCCTTTG
AGCAGATCTCTGTGGACCTACAAAGATGTACTGTCTTCTAGTGATGCTAC
ATCGACAAATAGATGACTTCTTAATTCTTAATGAAGACCTATAAGAATTC
CTAAAATTATTATTAAGCTCTCTTATGGTGGGACTGCTATTAGATCCCTT
TCTGATAATCAAAACTGCAATGAGAACTCTGTCAGTCTCCCATGTGTCAG
CAGTTAATTTCCTCTTAGATAGTAGACAAATCAGTAGTTAATTGCCCTCT
AGATAGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no530_n08.g1 MSMg01no530_n08.g1 CHROMAT_FILE:
MSMg01no530_n08.g1 PHD_FILE: MSMg01no530_n08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:07:17 2005
         (638 letters)



>mm_chr18_90024165_90025202
          Length = 1038

 Score =  650 bits (336), Expect = 0.0
 Identities = 351/356 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaatgtttctcccatatatataaaactttctacattgccaacaatcactatatttggt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 atgaatgtttcccccatatatataaaactttctacattgccaacaatcactatatttggt 297

                                                                       
Query: 61  ttaattaatacaaccttatactaaatggaattctatgttaaggacatacttggctacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttaattaatacaaccttatactaaatggaattctatgttaaggacatacttggctacata 237

                                                                       
Query: 121 cattttatatatttgacattttattatatatccaccattataatattacataaaaaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 cattttatatatttgacattttattatatatccaccattataatattacataaaaaattt 177

                                                                       
Query: 181 ataacccaaatatatttccatatacctcaaaacctttctgtcaggagccatagtaggaca 240
           | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 acaacccaaacatatttccatatacctcaaaacctttctgtcaggagccatagtaggaca 117

                                                                       
Query: 241 agataaataatagcaggtgatcttcttgagatggtctgctttggattataaatccacaac 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116 agataaataatatcaggtgatcttcttgagatggtctgctttggattataaatccacaac 57

                                                                   
Query: 301 agattttctctcataatccaggtccaaaagaattcactttaggaaacattcctgct 356
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 56  agattttctctcataatccaggtccaaaagaattcactttaggatacattcctgct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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