Query= MSMg01no532_d04.b1 MSMg01no532_d04.b1 CHROMAT_FILE:
MSMg01no532_d04.b1 PHD_FILE: MSMg01no532_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:03 2005
(650 letters)
>mm_chr18_56985782_56986833
Length = 1052
Score = 1108 bits (573), Expect = 0.0
Identities = 596/609 (97%), Gaps = 10/609 (1%)
Strand = Plus / Plus
Query: 5 gaattcatacctgtacttccatctcagcatttctgtaagccaggcaccttcaccttgttt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatacctgtacttccatctcagcatttctgtaagccaggcaccttcaccttgttt 264
Query: 65 atacagtgcttgtgcagccctactacatacatgtttactaggtactcgggagggatacac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atacagtgcttgtgcagccctactacatacatgtttactaggtactcgggagggatacac 324
Query: 125 tgctttaagaaacaaaatcggggcctttgcaactcttggatctaggtcataagaatattt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctttaagaaacaaaatcggggcctttgcaactcttggatctaggtcataagaatattt 384
Query: 185 actctccaaggagactagactatactttatcatggcttttattaagttctactttcaaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actctccaaggagactagactatactttatcatggcttttattaagttctactttcaaga 444
Query: 245 tgacataaaatatatgccctaaggtaacccatggcagtgcttatgcgtggaaacaatcct 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgacataaaatatatgccctaaggtaacccatggcagtgcttatgcgtggaaacaatcct 504
Query: 305 ggctgattcttccaactctgtatgttcataaactggactcacttcttaaattcacaaatg 364
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggctgattcttccagctctgtatgttcataaactggactcacttcttaaattcacaaatg 564
Query: 365 atgatcactgtggcaaatccaggaaca--attttctgctgtaaacacggcagaccctcag 422
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 565 atgatcactgtggcaaatccaggaacagaattttctgctgtaaacacggcagaccctcag 624
Query: 423 catctttttacagcttttaagtggttccgatgtacatgggactaaaagctgggagaatta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catctttttacagcttttaagtggttccgatgtacatgggactaaaagctgggagaatta 684
Query: 483 aaaactacacaaataatgaaaatgagttctgaggtgaattacccatcact--------tt 534
|||| |||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 685 aaaattacacaaataataaaaatgagttctgaggtgaattacccatcactgtggaggttt 744
Query: 535 tggaatattttcatttaagaagagtaaaaaggccatctaaagatgcttgtgtatctacaa 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tggaatattttcatttaagaagagtaaaaaggccatctaaagatgcttgtgtatctacaa 804
Query: 595 atgatggtg 603
|||||||||
Sbjct: 805 atgatggtg 813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1052
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1042
Effective search space: 666880
Effective search space used: 666880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no532_d04.g1 MSMg01no532_d04.g1 CHROMAT_FILE:
MSMg01no532_d04.g1 PHD_FILE: MSMg01no532_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:09:04 2005
(573 letters)
>mm_chr18_57153913_57154885
Length = 973
Score = 1077 bits (557), Expect = 0.0
Identities = 569/573 (99%)
Strand = Plus / Minus
Query: 1 gagagatggggctttctctttaatccaccttcatctgtctgctcactaacatctccatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 gagagatggggctttctctttaatccaccttcatctgtctgctcactaacatctccatcc 632
Query: 61 aggctaccatccagctggagattagacagatttgaaaggagagcagccttgagcttcagg 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 631 aggctaccatccagctggagattagacagatttgaaaggagagtagccttgagcttcagg 572
Query: 121 aaagcccaaatcacaaacacacagagcagcaaggccacctcaagtgggaactcctgctcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aaagcccaaatcacaaacacacagagcagcaaggccacctcaagtgggaactcctgctcc 512
Query: 181 cacctctcacatatcctatagcctgagcggtccctacctttcctgccagacttgggctga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 cacctctcacatatcctatagcctgagcggtccctacctttcctgccagacttgggctga 452
Query: 241 actccccaggaactctccagagtaggactgtggtaaacatactcatgtgaaggtcaaagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 actccccaggaactctccagagtaggactgtggtaaacatactcatgtgaaggtcaaagg 392
Query: 301 gcacagatgtaaccaggattctctccaatgcctggggaaatcgagggatgcgttgtgaca 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 391 gcacagatgtaaccaggattctctccaatgcctggggaaatcaagggatgcgttgtgaca 332
Query: 361 tgcacatttggatataccaggcttgaaggtaaatagactaagtgttgttcgtgaacagcg 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgcacatttagatataccaggcttgaaggtaaatagactaagtgttgttcgtgaacagcg 272
Query: 421 ttgtattcagtgacgcccaatgctcagtagaaagactctcagctaaggcacagcatgtct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttgtattcagtgacgcccaatgctcagtagaaagactctcagctaaggcacagcatgtct 212
Query: 481 ccactgtctcctgggcaagtaaagaaaacacgcgctttaagatcagaaaaacctgagctc 540
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 211 ccactgtctcctgggcaagtaaagaaaacacgcactttaagatcagaaaaacctgagctc 152
Query: 541 cacttctggcttcagcatttgccggctttgtga 573
|||||||||||||||||||||||||||||||||
Sbjct: 151 cacttctggcttcagcatttgccggctttgtga 119
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
