Query= MSMg01no533_o02.b1 MSMg01no533_o02.b1 CHROMAT_FILE:
MSMg01no533_o02.b1 PHD_FILE: MSMg01no533_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:12 2005
(440 letters)
>mm_chr18_69764684_69765525
Length = 842
Score = 808 bits (418), Expect = 0.0
Identities = 425/428 (99%), Gaps = 2/428 (0%)
Strand = Plus / Plus
Query: 15 caactagagaattagctttggcgctgcctctttctggggtgcctgtgaatttgccctaca 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 caactagagaattagctttggcgctgcctctttctggggtgcctgtgaatttgccctaca 274
Query: 75 ttggctttggggggg--tcatgttgtcatattgggtggtacagaattgtttccattcata 132
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ttggctttgggggggggtcatgttgtcatattgggtggtacagaattgtttccattcata 334
Query: 133 gtgagcagctacagagatgtcatttgacctgtcgccattccacgaagtacaggctaccat 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gtgagcagctacagagatgtcatttgacctgtcgccattccacgaagtacaggctaccat 394
Query: 193 tttgataaatccatttatttgagcatttccatttatgggagatggtgtttgttttacatc 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tttgataaatccatttatttgagcatttccatttatgggagatggtgtttgttttacatc 454
Query: 253 atcaattaattttatagaaatgctcttttacagatcattgtccttgtttttaattttgat 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 atcaattaattttatagaaatgctcttttacagatcattgtccttgtttttaattttgat 514
Query: 313 taaacactaattatctatgttaggtcctcagtatttctctgatatttcgtaaaccccagt 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 taaacactaattatctatgttaggtcctcagtatttctctgatatttcgtaaaccccagt 574
Query: 373 ataatcctttgaataaatctaaagcaatatgcttattattgctttcagaacgtgttttgt 432
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 575 ataatcctttgaataaatctaaagcaatatgcttattattgctttcagaatgtgttttgt 634
Query: 433 aaaaaggc 440
||||||||
Sbjct: 635 aaaaaggc 642
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 842
Length adjustment: 9
Effective length of query: 431
Effective length of database: 833
Effective search space: 359023
Effective search space used: 359023
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no533_o02.g1 MSMg01no533_o02.g1 CHROMAT_FILE:
MSMg01no533_o02.g1 PHD_FILE: MSMg01no533_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:11:12 2005
(575 letters)
>mm_chr18_69955938_69956913
Length = 976
Score = 1029 bits (532), Expect = 0.0
Identities = 570/594 (95%), Gaps = 19/594 (3%)
Strand = Plus / Minus
Query: 1 caatgtgtttcagcgttagaagcaacacctcaaaagactcccgcgcgggaagagagagag 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 887 caatgtgtttcagcgttagaagcaacacctcaaaagactcctgcgcgggaagagagagag 828
Query: 61 agagagagagagagagagagagagagagaga------------------gatttcaagct 102
||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 827 agagagagagagagagagagagagagagagagagagagagagagagattgatttcaagct 768
Query: 103 tccttttgcctttgtgggaaaggtaaggaaccaagatgtattggacttgacgaagtgtta 162
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 767 tccttttgcctttgtgggaaaggtaaggaaccaagatgtattggacttgacaaagtgtta 708
Query: 163 ggtaaacaaagcc-ggcgtattaaactttaggctccagagattagtggggaagtacaggc 221
||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 707 ggtaaacaaagccgggcgtattaaagtttaggctccagtgattagtggggaagtacaggc 648
Query: 222 tactaggcacagaggggtgtcgcacaaggtactttagactccgactgtgtttattatcca 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 tactaggcacagaggggtgtcgcacaaggtactttagactccgactgtgtttattatcca 588
Query: 282 gtatcagtatggagatatatgcctgactacttttatggtgccatttagaactttaaaata 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gtatcagtatggagatatatgcctgactacttttatggtgccatttagaactttaaaata 528
Query: 342 agctcttatgctcagaaaggggttactaaattactcaccctgtaaggttttcctcgatta 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 agctcttatgctcagaaaggggttactaaattactcaccctgtaaggttttcctcgatta 468
Query: 402 gcataattctgcccattacacgccttatcaagagcgtgttttcattgttgggccccgcgt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 gcataattctgcccattacacgccttatcaagagcgtgttttcattgttgggccccgcgt 408
Query: 462 tctgaagagacattcagggatacattgccgcggcatcgtgtcaattctgaaatagcacct 521
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 407 tctgaagagacattcagggatacattgccgcggcatcgtgtcaattctgaaaaagcacct 348
Query: 522 ttcgatgactttgaagttaaaaacccttgtatcgcttgcaaagaaaacttctcc 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ttcgatgactttgaagttaaaaacccttgtatcgcttgcaaagaaaacttctcc 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 24
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space: 545790
Effective search space used: 545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
