BAC Information

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BAC

Clone NameMSMg01-534L04
Chromosome18 (Build37)
Map Location 69,838,312 - 69,838,594
singlet/doubletsinglet
Overlap geneTcf4
Upstream geneLOC100043380, EG225681
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534L04.T7 (MSMg01no534_l04.b1)MSMg01-534L04.TJ (MSMg01no534_l04.g1)
ACCAG602322AG602323
length759791
length of high quality
(start - end)
399 (43 - 441)286 (72 - 357)
definitionCHROMAT_FILE: MSMg01no534_l04.b1 PHD_FILE: MSMg01no534_l04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:18 2005CHROMAT_FILE: MSMg01no534_l04.g1 PHD_FILE: MSMg01no534_l04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTGTGTATCTATTAGTCTGCCATATACTTGCATCTGTTTATTTGTTTT
GAGACAGGGTCTCACTCTACAGCCTTGGCTGACCTGGAACACACTGTATA
GTCAAGGCTGGCCTCTGCTTCTAATAAAAGTACCTGTTTATTACATATAT
CTCAAAGATATGTCATAAATTCTTATAAGGTTATGAAAGCAAAATAAATT
GTGGCTGGGCAGTGGTGGTGCATACCTTTAATCCCAGCATTCGGAGGTAG
AGGTGAGTGGATCTCTATGAATTCAAGGCCAGCCTGGTCTACAAAGTGAG
TTCTAGGGCAGGCAGGGCTGTTAAACCTGTGTGTGTGTGTGTGTGTATGT
GTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGATATAGATA
TCCTCCTTTCCCCAATATTTTTTTTCCTACCTTCTACTTTTACCAAATTT
TTTTCACTATTATTTGTCTTTTTTTTTATCTTTTTTTTCAACACTCGCCT
TCATTTCATTTTACTATATCATATTTCTTTATTTTTCTATCTTATCACAT
TATTATATTATAACCTTACTGCTTTAAACTATTTATATATATCATTTATA
CTTTTCACCCCTCTCCCTTCATCCCTCCTTTTAATCACCCTTCTCTCCAC
TTTCTTTCTGTTCTTTCTTTTTATTTATTTCACATTTTCTCTTCTTCTCT
CATTAATTT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAATTCAGGAAAGACGCCAGCTGTAAGCCC
CCAACTCCAACCACACCCTTTGAAAGAAGCCGTAGTCTCGACACCAGTGG
GTAATCTGCAAAGAAAATTAACCCAGAGGAATGAGGGATGTGTATGGGTG
CCATGGAATTCCAAACCATCCAATGACCAAATTCAAGTTTAAAGAGACAC
ACCGAATGAGAAGGTTCCAGATATTTAAGAACATCAATTCCAATTTGAAG
CTATTTCCCTGTGGTTGGGTTTGTAGTAGCGGGGGTTGGGGGTGGTGGTG
GTAATGTNTTNTTNCTTTTTTCCACCCTTTTTNTTTTTTTTTTATTTTTC
CCTTTTTTCTCCCCCTTTTTTTTTTCCCTTTTCCCCTCTTTTATATTTTT
CTCATATATTTTCCCTTCTTCTTTTACCCTTTTTATTTTTTTTTACTTAC
TCCCCTTTTTTTTTTTTTATCCCTCGCCGTTTTTTTCCCGTAGAATTTAT
CCGCTTGAACGAATTCCTTTTTTGTTTTATTTTTTTACATTTTTCTCTTT
TTATATATTTACTCCTTCCTTTTCCCGTTGTGTTTTTTCCCGTTTCTCCT
ATGTTTCCGTTTTCTTTTTGTTTTTTTTTTCTCACCTTATCCTCTTTCTT
TTTCTTGCCTATCATTTTTCTTCCATACCTCTCCTCTTTCTTTCCCTCAT
TACCCGTGATCCTTTATCCGTTCTTCTTTTTTCTTATCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_l04.g1 MSMg01no534_l04.g1 CHROMAT_FILE:
MSMg01no534_l04.g1 PHD_FILE: MSMg01no534_l04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:18 2005
         (286 letters)



>mm_chr18_69838112_69838797
          Length = 686

 Score =  540 bits (279), Expect = e-158
 Identities = 282/283 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcaggaaagacgccagctgtaagcccccaactccaaccacaccctttgaaagaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aattcaggaaagacgccagctgtaagcccccaactccaaccacaccctttgaaagaagcc 424

                                                                       
Query: 61  gtagtctcgacaccagtgggtaatctgcaaagaaaattaacccagaggaatgagggatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 gtagtctcgacaccagtgggtaatctgcaaagaaaattaacccagaggaatgagggatgt 364

                                                                       
Query: 121 gtatgggtgccatggaattccaaaccatccaatgaccaaattcaagtttaaagagacaca 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 363 gtatgggtgccatggaattccaaaccatccaatgaccagattcaagtttaaagagacaca 304

                                                                       
Query: 181 ccgaatgagaaggttccagatatttaagaacatcaattccaatttgaagctatttccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ccgaatgagaaggttccagatatttaagaacatcaattccaatttgaagctatttccctg 244

                                                      
Query: 241 tggttgggtttgtagtagcgggggttgggggtggtggtggtaa 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tggttgggtttgtagtagcgggggttgggggtggtggtggtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)