BAC Information

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BAC

Clone NameMSMg01-534P02
Chromosome18 (Build37)
Map Location 69,838,316 - 69,838,594
singlet/doubletsinglet
Overlap geneTcf4
Upstream geneLOC100043380, EG225681
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-534P02.T7 (MSMg01no534_p02.b1)MSMg01-534P02.TJ (MSMg01no534_p02.g1)
ACCAG602509AG602510
length750786
length of high quality
(start - end)
159 (42 - 200)279 (73 - 351)
definitionCHROMAT_FILE: MSMg01no534_p02.b1 PHD_FILE: MSMg01no534_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:37 2005CHROMAT_FILE: MSMg01no534_p02.g1 PHD_FILE: MSMg01no534_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:12:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTATTGTCTCCGCTTXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCTGTGGATCTATTAGTCTGCCTATACTTGCATCTGTTTATTTGTTTTGA
GACAGGGTCTCACTCTACAGCCTTGGCTGACCTGGAACACACTGTATAGT
CAAGGCTGGCCTCTGCTTCTAATAAAAGTACCTGTTTATTACATATATCT
TCCCCNNNNCNNNAGATATGTCATAAATTCTTATAAGGTTTATGAAAAGC
AAAAATAAATTTGTGCGGTTGGGGCCACATGGTGGTTGCATACCCTTTTA
TCCCCCAGCCTTTTCGGAAGTAAAGGGGGAATGGATTCTCCTATAATTTC
AGGGCCCCCCCCGGGCTCTACAAAAGTTAATTTTTTAGGTCCCGCGTCAG
GCCCTTTTTAACCCCCGTTTGGGGGCTTGGCGTTTTTAATATGTTGTTTT
CTATCTTTGTCTTCTCCCCTTATTTAAAAAAATAATATTCTTCCTTATTT
TTTTCTCTATTACTCATTCAGTTCTCCCCTTTCCTCTCTCTTTTCTCATT
TCTCAACTTTCATTTATTTTTTCCTCTCTTTTCCCTTTTTCTTACTCTAT
CCTTCTCTCCTTCCCTACTACTATCTACTACCTTATTTACTTTTTTCTTC
CTCCTCTCCTCCGTTCGTTCTTCTTTTATTCCTCTTCTCCTCTCTTCTTT
TCCCTTCTCACATATTCTTTTTTACCATTTTTTCTCTTTTCATTATTTTT

GACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATTCAGGAAAGACGCCAGCTGTAAGCC
CCCAACTCCAACCACACCCTTTGAAAGAAGCCGTAGTCTCGACACCAGTG
GGTAATCTGCAAAGAAAATTAACCCAGAGGAATGAGGGATGTGTATGGGT
GCCATGGAATTCCAAACCATCCAATGACCAAATTCAAGTTTAAAGAGACA
CACCGAATGAGAAGGTTCCAGATATTTAAGAACATCAATTCCAATTTGAA
GCTATTTCCCTGTGGTTGGGTTTGTAGTAGCGGGGGTTGGGGGTGGTGGT
GGTAATATTCCCCCTTTTTTCCGGCCCCTCGTCTGTCCGTGTCTGTTTTT
GCATTTTGTCTTCCCCTATTTTTTCTTTTTTCGCCCCTATTGTGTTTTTT
CAACTTTATTTCTATTTTTTTTACTCCTTTTTCGTTGTGCTCTTCTCCGC
TGTTTTATTTTTTTTTTCCCTCCCCTTTTTATTACCCCTAATAGATGTCC
CGCGTCAGCTTTTCCCTTTTTCTCTTTTATTCTTCACCCTTTTTTTAATT
TTTTTTATTTAAATTTGTTGTATTCCCTTCCTGTTTTTTCTCTGTTTTCT
TCTCTTTCCTTTTTCTTCCTTTTTCTCTTTCTATCGTTTTTCCTATTTTC
TTTAGGCTATCGTTTTCTCATCCATCAATTTTTTTTGGTTTCTCCTTTAG
CCGGTTTCAATATCCCTTTTCTATTGTTGTTACCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no534_p02.g1 MSMg01no534_p02.g1 CHROMAT_FILE:
MSMg01no534_p02.g1 PHD_FILE: MSMg01no534_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:12:37 2005
         (279 letters)



>mm_chr18_69838116_69838794
          Length = 679

 Score =  532 bits (275), Expect = e-155
 Identities = 278/279 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcaggaaagacgccagctgtaagcccccaactccaaccacaccctttgaaagaagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aattcaggaaagacgccagctgtaagcccccaactccaaccacaccctttgaaagaagcc 420

                                                                       
Query: 61  gtagtctcgacaccagtgggtaatctgcaaagaaaattaacccagaggaatgagggatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 gtagtctcgacaccagtgggtaatctgcaaagaaaattaacccagaggaatgagggatgt 360

                                                                       
Query: 121 gtatgggtgccatggaattccaaaccatccaatgaccaaattcaagtttaaagagacaca 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 359 gtatgggtgccatggaattccaaaccatccaatgaccagattcaagtttaaagagacaca 300

                                                                       
Query: 181 ccgaatgagaaggttccagatatttaagaacatcaattccaatttgaagctatttccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ccgaatgagaaggttccagatatttaagaacatcaattccaatttgaagctatttccctg 240

                                                  
Query: 241 tggttgggtttgtagtagcgggggttgggggtggtggtg 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tggttgggtttgtagtagcgggggttgggggtggtggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)